C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: S-phase kinase-associated protein 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037324 Skp1a-001 ENSMUSG00000036309 10090 + 11:52232009-52246858 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037324
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037324 28.379±0.51 19.859±2.86 92.210±3.59 77.944±13.85 19.619±9.35 9.312±3.67 24.922±0.85 35.381±11.55 42.116±12.32 19.884±4.58 89.298±5.83 25.123±33.66 66.733±26.98 3.859±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089W CIL_00089W_0002 VISTA 11:51640537-52246109

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IC ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0006511 IC ubiquitin-dependent protein catabolic process
GO:0016567 IEA protein ubiquitination
GO:0019005 ISS SCF ubiquitin ligase complex
GO:0031146 IDA SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031467 IDA Cul7-RING ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328392 SKP1-008 protein_coding Homo_sapiens 0 706
ENST00000353411 SKP1-001 protein_coding Homo_sapiens 0 994
ENST00000429280 SKP1P3-001 processed_pseudogene Homo_sapiens 0 440
ENST00000438081 SKP1P1-001 processed_pseudogene Homo_sapiens 0 678
ENST00000444513 RP11-1018J11.1-001 processed_pseudogene Homo_sapiens 0 606
ENST00000448532 RP11-302K17.3-001 processed_pseudogene Homo_sapiens 0 294
ENST00000454105 RP11-302K17.4-001 processed_pseudogene Homo_sapiens 1e-27 124
ENST00000506122 RP11-241J12.3-001 processed_pseudogene Homo_sapiens 0 444
ENST00000506450 RP11-302F12.2-001 processed_pseudogene Homo_sapiens 0 455
ENST00000517625 SKP1-004 protein_coding Homo_sapiens 0 883
ENST00000517691 SKP1-013 retained_intron Homo_sapiens 0 464
ENST00000519054 SKP1-011 nonsense_mediated_decay Homo_sapiens 0 523
ENST00000519321 SKP1-003 protein_coding Homo_sapiens 0 656
ENST00000519718 CTD-2410N18.5-001 protein_coding Homo_sapiens 0 244
ENST00000520417 SKP1-006 protein_coding Homo_sapiens 0 466
ENST00000521216 SKP1-009 protein_coding Homo_sapiens 0 819
ENST00000522552 SKP1-002 protein_coding Homo_sapiens 0 712
ENST00000522855 SKP1-005 protein_coding Homo_sapiens 0 883
ENST00000523359 SKP1-007 protein_coding Homo_sapiens 0.00000000000006 82
ENST00000523966 SKP1-010 nonsense_mediated_decay Homo_sapiens 0 741
ENST00000524288 SKP1-012 retained_intron Homo_sapiens 1e-35 154
ENST00000610519 RP11-1082I11.2-001 processed_pseudogene Homo_sapiens 0 442

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