C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039568 Pcdh8-201 ENSMUSG00000036422 10090 - 14:79766772-79771312 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000039568
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000039568 0.027±0.01 0.017±0.01 0.044±0.03 16.118±10.66 0.012±0.00 0.008±0.00 0.011±0.00 0.032±0.02 0.019±0.01 0.020±0.01 0.535±0.13 0.026±0.01 0.928±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ME CIL_0000ME_0002 CGP 14:79637690-79771312

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001756 IMP somitogenesis
GO:0005509 IEA calcium ion binding
GO:0005887 ISS integral component of plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007268 IEA synaptic transmission
GO:0016331 IMP morphogenesis of embryonic epithelium
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338862 PCDH8-002 protein_coding Homo_sapiens 0 2577
ENST00000377942 PCDH8-001 protein_coding Homo_sapiens 0 4532
ENST00000613548 PCDH8-005 retained_intron Homo_sapiens 0 852

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