C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S27-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036781 Rps27l 10090 + 9:66946086-66949516 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040917 Rps27l-001 66946086-66949512 protein_coding
  ENSMUST00000123931 Rps27l-006 66948563-66949511 retained_intron
  ENSMUST00000127896 Rps27l-002 66946091-66949514 protein_coding
  ENSMUST00000143044 Rps27l-005 66946355-66949516 processed_transcript
  ENSMUST00000146573 Rps27l-004 66947642-66949468 protein_coding
  ENSMUST00000147394 Rps27l-003 66946166-66949468 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040917ENSMUST00000127896ENSMUST00000143044
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040917 33.333±2.78 5.053±1.60 144.137±27.04 33.955±24.12 21.626±6.88 24.327±3.72 28.255±0.35 59.136±10.66 144.001±87.31 21.894±1.41 116.070±4.48 37.447±67.64 170.098±98.49 33.649±12.29
ENSMUST00000127896 N/A N/A N/A N/A 2.236±0.00 N/A N/A N/A N/A N/A N/A 1.554±0.00 N/A N/A
ENSMUST00000143044 N/A 1.014±0.33 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.805±0.22 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098V CIL_00098V_0002 VISTA 9:66700483-67304558
CIL_00094O CIL_00094O_0002 VISTA 9:66740666-67343521

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005840 IEA ribosome
GO:0006281 IEA DNA repair
GO:0006412 IEA translation
GO:0006919 IEA activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0008494 IEA translation activator activity
GO:0008656 IEA cysteine-type endopeptidase activator activity involved in apoptotic process
GO:0031571 IEA mitotic G1 DNA damage checkpoint
GO:0042771 IEA intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0044822 IEA poly(A) RNA binding
GO:0045727 IEA positive regulation of translation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090186 rps27.2 ribosomal protein S27, isoform 2 protein_coding Danio_rerio
ENSG00000185088 RPS27L ribosomal protein S27-like protein_coding Homo_sapiens

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