C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127896 Rps27l-002 ENSMUSG00000036781 10090 + 9:66946091-66949514 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryENSMUST00000127896
Transcript ID Breast Ovary
ENSMUST00000127896 2.236±0.00 1.554±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098V CIL_00098V_0002 VISTA 9:66700483-67304558
CIL_00094O CIL_00094O_0002 VISTA 9:66740666-67343521

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330964 RPS27L-001 protein_coding Homo_sapiens 1e-23 117
ENST00000411926 RPS27L-004 protein_coding Homo_sapiens 4e-24 115
ENST00000455271 RPS27L-003 protein_coding Homo_sapiens 2e-24 117
ENST00000462430 RPS27L-006 protein_coding Homo_sapiens 2e-24 117
ENST00000482846 RPS27L-002 retained_intron Homo_sapiens 7e-24 117

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