C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S27-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185088 RPS27L 9606 - 15:63125872-63158021 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330964 RPS27L-001 63148250-63157802 protein_coding
  ENST00000411926 RPS27L-004 63153859-63158021 protein_coding
  ENST00000439025 RPS27L-005 63154971-63157499 protein_coding
  ENST00000455271 RPS27L-003 63153853-63157281 protein_coding
  ENST00000462430 RPS27L-006 63153853-63156774 protein_coding
  ENST00000482846 RPS27L-002 63153853-63157477 retained_intron
  ENST00000559763 RPS27L-007 63125872-63155715 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330964ENST00000411926ENST00000439025ENST00000455271ENST00000482846
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330964 0.708±0.00 1.760±0.00 0.886±0.00 0.890±0.00 0.835±0.14 0.877±0.00 N/A 1.028±0.21 0.796±0.00 N/A N/A 2.194±0.00 0.286±0.00 0.386±0.00
ENST00000411926 40.644±0.00 45.856±0.00 N/A 15.020±0.00 37.231±0.00 84.595±0.00 84.700±0.00 61.684±0.00 30.934±20.36 66.262±0.00 28.723±26.02 53.115±29.93 34.848±19.88 46.601±0.00
ENST00000439025 8.296±0.00 9.446±0.00 12.313±0.00 3.643±0.00 18.375±10.76 19.185±0.00 N/A 27.054±0.00 N/A 15.784±8.57 8.909±0.00 24.317±14.64 6.419±1.80 8.791±5.21
ENST00000455271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.554±0.00
ENST00000482846 N/A N/A N/A 1.119±0.00 N/A N/A N/A N/A N/A 1.885±0.00 N/A 3.894±0.00 N/A 0.331±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094O CIL_00094O_0001 VISTA 15:62748846-63351985
CIL_00098V CIL_00098V_0001 VISTA 15:62790346-63394142

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005840 IEA ribosome
GO:0006281 IMP DNA repair
GO:0006412 IEA:IDA translation
GO:0006919 IDA activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0008494 IDA translation activator activity
GO:0008656 IDA cysteine-type endopeptidase activator activity involved in apoptotic process
GO:0031571 IMP mitotic G1 DNA damage checkpoint
GO:0042771 IDA intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IDA positive regulation of translation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090186 rps27.2 ribosomal protein S27, isoform 2 protein_coding Danio_rerio
ENSMUSG00000036781 Rps27l ribosomal protein S27-like protein_coding Mus_musculus

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