C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S27-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040917 Rps27l-001 ENSMUSG00000036781 10090 + 9:66946086-66949512 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040917
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040917 33.333±2.78 5.053±1.60 144.137±27.04 33.955±24.12 21.626±6.88 24.327±3.72 28.255±0.35 59.136±10.66 144.001±87.31 21.894±1.41 116.070±4.48 37.447±67.64 170.098±98.49 33.649±12.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098V CIL_00098V_0002 VISTA 9:66700483-67304558
CIL_00094O CIL_00094O_0002 VISTA 9:66740666-67343521

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005840 IEA ribosome
GO:0006281 IEA DNA repair
GO:0006412 IEA translation
GO:0006919 IEA activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0006974 IEA cellular response to DNA damage stimulus
GO:0008494 IEA translation activator activity
GO:0008656 IEA cysteine-type endopeptidase activator activity involved in apoptotic process
GO:0031571 IEA mitotic G1 DNA damage checkpoint
GO:0042771 IEA intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0044822 IEA poly(A) RNA binding
GO:0045727 IEA positive regulation of translation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330964 RPS27L-001 protein_coding Homo_sapiens 0 385
ENST00000411926 RPS27L-004 protein_coding Homo_sapiens 0 377
ENST00000455271 RPS27L-003 protein_coding Homo_sapiens 0 379
ENST00000462430 RPS27L-006 protein_coding Homo_sapiens 0 379
ENST00000482846 RPS27L-002 retained_intron Homo_sapiens 7e-24 117

Loading