C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 2410004B18 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036873 2410004B18Rik 10090 + 3:145938014-145944829 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039571 2410004B18Rik-001 145938014-145944829 protein_coding
  ENSMUST00000134575 2410004B18Rik-002 145938042-145944827 nonsense_mediated_decay
  ENSMUST00000138876 2410004B18Rik-003 145938644-145943853 retained_intron
  ENSMUST00000152783 2410004B18Rik-004 145938190-145943810 nonsense_mediated_decay
  ENSMUST00000188034 2410004B18Rik-006 145939086-145944198 protein_coding
  ENSMUST00000189656 2410004B18Rik-008 145938236-145938787 retained_intron
  ENSMUST00000190472 2410004B18Rik-007 145938285-145944242 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039571ENSMUST00000134575ENSMUST00000152783ENSMUST00000188034ENSMUST00000190472
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039571 3.186±0.25 3.163±0.65 3.570±2.37 8.515±3.51 2.276±0.60 4.239±1.26 3.572±0.40 3.417±0.64 2.316±1.45 4.499±1.33 6.327±0.74 5.321±2.08 5.459±2.99 2.516±0.50
ENSMUST00000134575 2.398±1.55 3.730±0.97 3.270±0.00 1.331±0.00 2.502±0.98 2.651±0.39 0.738±0.05 1.510±0.56 1.163±0.72 2.846±0.33 0.726±0.00 3.005±1.17 3.533±0.95 2.225±0.82
ENSMUST00000152783 N/A N/A N/A N/A N/A N/A N/A N/A 0.695±0.00 N/A N/A N/A N/A N/A
ENSMUST00000188034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.009±0.85 10.435±0.00 N/A
ENSMUST00000190472 N/A N/A N/A 6.774±0.00 N/A N/A N/A N/A N/A N/A 2.961±0.66 6.435±1.47 15.126±6.47 2.986±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QR CIL_0007QR_0002 VISTA 3:145664099-146264929

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077566 CZv9_NA991H1orf52 chromosome 1 open reading frame 52 protein_coding Danio_rerio
ENSG00000162642 C1orf52 chromosome 1 open reading frame 52 protein_coding Homo_sapiens

Loading