C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromosome 1 open reading frame 52
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162642 C1orf52 9606 - 1:85249953-85259672 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000294661 C1orf52-003 85249953-85259672 processed_transcript
  ENST00000344356 C1orf52-002 85257443-85259633 protein_coding
  ENST00000471115 C1orf52-001 85251968-85259642 protein_coding
  ENST00000493514 C1orf52-004 85257443-85259633 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000294661ENST00000344356ENST00000471115ENST00000493514
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000294661 N/A N/A 0.243±0.00 2.310±0.35 0.856±0.25 0.795±0.00 0.287±0.23 N/A N/A 0.410±0.00 0.017±0.00 0.784±0.12 0.933±0.11 0.978±0.00
ENST00000344356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.494±0.00 N/A N/A
ENST00000471115 3.052±0.00 5.917±0.00 0.089±0.00 5.082±2.20 2.943±1.40 2.589±1.75 2.007±1.56 3.184±2.53 1.814±0.00 3.275±2.14 0.754±0.44 5.558±3.55 9.191±4.11 13.895±5.23
ENST00000493514 N/A N/A 0.228±0.00 N/A N/A N/A N/A N/A N/A 9.213±0.00 N/A N/A 3.552±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QR CIL_0007QR_0001 VISTA 1:84924957-85525799

Gene Ontology
GO IDEvidence TypeGO Description
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077566 CZv9_NA991H1orf52 chromosome 1 open reading frame 52 protein_coding Danio_rerio
ENSMUSG00000036873 2410004B18Rik RIKEN cDNA 2410004B18 gene protein_coding Mus_musculus

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