C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cDNA sequence BC037034
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036948 BC037034 10090 - 5:138259656-138264046 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048421 BC037034-001 138259656-138263994 protein_coding
  ENSMUST00000159123 BC037034-004 138259659-138263990 nonsense_mediated_decay
  ENSMUST00000159146 BC037034-008 138260105-138260945 protein_coding
  ENSMUST00000159534 BC037034-005 138259660-138264033 retained_intron
  ENSMUST00000159649 BC037034-003 138259658-138263340 protein_coding
  ENSMUST00000159872 BC037034-006 138262253-138263138 retained_intron
  ENSMUST00000161604 BC037034-002 138259660-138264046 protein_coding
  ENSMUST00000162632 BC037034-007 138261570-138262194 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048421ENSMUST00000159534ENSMUST00000161604
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048421 N/A N/A N/A 5.076±1.44 6.050±0.00 N/A N/A 6.191±1.15 3.535±0.00 0.777±0.00 7.548±0.00 7.446±1.75 N/A
ENSMUST00000159534 5.072±2.21 5.787±1.83 N/A 3.500±0.65 N/A 0.668±0.00 1.963±0.00 4.937±1.05 5.181±0.52 N/A 8.422±0.91 2.794±0.52 N/A
ENSMUST00000161604 N/A N/A 4.228±0.00 5.471±0.00 N/A 2.295±0.17 6.567±0.00 2.877±1.40 N/A N/A 11.737±1.94 N/A 9.226±5.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0002JK CIL_0002JK_0002 CGP 5:138255608-138264046

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078891 C7H7orf43 chromosome 7 open reading frame 43 protein_coding Danio_rerio
ENSG00000146826 C7orf43 chromosome 7 open reading frame 43 protein_coding Homo_sapiens

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