C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cDNA sequence BC037034
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048421 BC037034-001 ENSMUSG00000036948 10090 - 5:138259656-138263994 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverLungMuscleOvaryPlacentaENSMUST00000048421
Transcript ID Breast Colon Liver Lung Muscle Ovary Placenta
ENSMUST00000048421 5.076±1.44 6.050±0.00 6.191±1.15 3.535±0.00 0.777±0.00 7.548±0.00 7.446±1.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0002JK CIL_0002JK_0002 CGP 5:138255608-138264046

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316937 C7orf43-001 protein_coding Homo_sapiens 0 2460
ENST00000394035 C7orf43-007 protein_coding Homo_sapiens 0 778
ENST00000419037 C7orf43-004 nonsense_mediated_decay Homo_sapiens 0 778
ENST00000419841 C7orf43-005 protein_coding Homo_sapiens 0 1441
ENST00000448720 C7orf43-006 nonsense_mediated_decay Homo_sapiens 0 726
ENST00000456769 C7orf43-008 protein_coding Homo_sapiens 0 1956
ENST00000457641 C7orf43-010 protein_coding Homo_sapiens 0 1960
ENST00000470260 C7orf43-014 retained_intron Homo_sapiens 0 523
ENST00000472061 C7orf43-011 processed_transcript Homo_sapiens 0 302
ENST00000490633 LAMTOR4-012 protein_coding Homo_sapiens 0 228
ENST00000498638 C7orf43-012 processed_transcript Homo_sapiens 0 697
ENST00000612870 C7orf43-201 protein_coding Homo_sapiens 0 767

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