C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cDNA sequence BC037034
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159534 BC037034-005 ENSMUSG00000036948 10090 - 5:138259660-138264033 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLiverLungOvaryPlacentaENSMUST00000159534
Transcript ID Adipose Bladder Breast Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000159534 5.072±2.21 5.787±1.83 3.500±0.65 0.668±0.00 1.963±0.00 4.937±1.05 5.181±0.52 8.422±0.91 2.794±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0002JK CIL_0002JK_0002 CGP 5:138255608-138264046

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316937 C7orf43-001 protein_coding Homo_sapiens 0 774
ENST00000394035 C7orf43-007 protein_coding Homo_sapiens 0 795
ENST00000419037 C7orf43-004 nonsense_mediated_decay Homo_sapiens 0 774
ENST00000419841 C7orf43-005 protein_coding Homo_sapiens 0 713
ENST00000448720 C7orf43-006 nonsense_mediated_decay Homo_sapiens 0 747
ENST00000456769 C7orf43-008 protein_coding Homo_sapiens 0 774
ENST00000457641 C7orf43-010 protein_coding Homo_sapiens 0 774
ENST00000470260 C7orf43-014 retained_intron Homo_sapiens 0 523
ENST00000472061 C7orf43-011 processed_transcript Homo_sapiens 0 241
ENST00000490633 LAMTOR4-012 protein_coding Homo_sapiens 0 248
ENST00000498638 C7orf43-012 processed_transcript Homo_sapiens 0 579
ENST00000612870 C7orf43-201 protein_coding Homo_sapiens 0 787

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