C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein of the cerebellum 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000036972 Zic4 10090 + 9:91362413-91389348 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066384 Zic4-008 91378642-91389348 protein_coding
  ENSMUST00000085242 Zic4-012 91382410-91388044 processed_transcript
  ENSMUST00000170572 Zic4-005 91369498-91379540 retained_intron
  ENSMUST00000172646 Zic4-001 91368970-91387793 protein_coding
  ENSMUST00000172858 Zic4-010 91378197-91384398 retained_intron
  ENSMUST00000172978 Zic4-009 91368367-91369133 processed_transcript
  ENSMUST00000173054 Zic4-011 91368812-91379257 protein_coding
  ENSMUST00000173342 Zic4-002 91362413-91378915 protein_coding
  ENSMUST00000173933 Zic4-003 91371213-91386958 protein_coding
  ENSMUST00000174212 Zic4-007 91371004-91379189 protein_coding
  ENSMUST00000174611 Zic4-004 91368894-91380986 retained_intron
  ENSMUST00000174802 Zic4-006 91371350-91373923 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverMusclePlacentaTestisENSMUST00000066384ENSMUST00000172858ENSMUST00000173054ENSMUST00000174212ENSMUST00000174611ENSMUST00000174802
Transcript ID Adipose Bladder Brain Breast Liver Muscle Placenta Testis
ENSMUST00000066384 N/A 0.006±0.00 16.676±0.15 N/A 0.004±0.00 N/A 0.009±0.00 0.018±0.00
ENSMUST00000172858 0.017±0.00 N/A N/A N/A N/A N/A N/A 0.028±0.01
ENSMUST00000173054 N/A N/A N/A 0.052±0.00 N/A N/A N/A 0.051±0.00
ENSMUST00000174212 N/A N/A N/A 0.189±0.00 N/A N/A N/A N/A
ENSMUST00000174611 N/A N/A N/A N/A N/A 0.053±0.01 0.013±0.00 N/A
ENSMUST00000174802 N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JF CIL_0007JF_0002 UCNEbase 9:90313955-92046042
CIL_0009BL CIL_0009BL_0002 VISTA 9:90773325-91374668
CIL_0009D8 CIL_0009D8_0002 VISTA 9:90787948-91390091
CIL_0008O7 CIL_0008O7_0002 VISTA 9:91066858-91668202
CIL_00092J CIL_00092J_0002 VISTA 9:91145767-91747284
CIL_00092K CIL_00092K_0002 VISTA 9:91162357-91763891
CIL_000589 CIL_000589_0002 CGP 9:91358058-91389348
CIL_000580 CIL_000580_0002 CGP 9:91362413-92209772

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031307 zic4 zic family member 4 protein_coding Danio_rerio
ENSG00000174963 ZIC4 Zic family member 4 protein_coding Homo_sapiens

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