C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein of the cerebellum 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066384 Zic4-008 ENSMUSG00000036972 10090 + 9:91378642-91389348 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverPlacentaTestisENSMUST00000066384
Transcript ID Bladder Brain Liver Placenta Testis
ENSMUST00000066384 0.006±0.00 16.676±0.15 0.004±0.00 0.009±0.00 0.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JF CIL_0007JF_0002 UCNEbase 9:90313955-92046042
CIL_0009BL CIL_0009BL_0002 VISTA 9:90773325-91374668
CIL_0009D8 CIL_0009D8_0002 VISTA 9:90787948-91390091
CIL_0008O7 CIL_0008O7_0002 VISTA 9:91066858-91668202
CIL_00092J CIL_00092J_0002 VISTA 9:91145767-91747284
CIL_00092K CIL_00092K_0002 VISTA 9:91162357-91763891
CIL_000589 CIL_000589_0002 CGP 9:91358058-91389348
CIL_000580 CIL_000580_0002 CGP 9:91362413-92209772

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000010774 zic2a-001 protein_coding Danio_rerio 0 342
ENST00000282928 ZIC1-001 protein_coding Homo_sapiens 0 422
ENST00000376335 ZIC2-001 protein_coding Homo_sapiens 0 381
ENST00000383075 ZIC4-001 protein_coding Homo_sapiens 0 2266
ENST00000425731 ZIC4-201 protein_coding Homo_sapiens 0 2266
ENST00000462748 ZIC4-002 protein_coding Homo_sapiens 0 760
ENST00000463850 ZIC4-014 processed_transcript Homo_sapiens 0 564
ENST00000464502 ZIC4-013 processed_transcript Homo_sapiens 0 414
ENST00000472749 ZIC4-007 processed_transcript Homo_sapiens 0 1511
ENST00000473123 ZIC4-003 protein_coding Homo_sapiens 0 1504
ENST00000480015 ZIC4-017 processed_transcript Homo_sapiens 0 200
ENST00000484399 ZIC4-004 protein_coding Homo_sapiens 0 1692
ENST00000493664 ZIC4-005 retained_intron Homo_sapiens 0 2344
ENST00000494569 ZIC4-006 retained_intron Homo_sapiens 0 1513
ENST00000525172 ZIC4-202 protein_coding Homo_sapiens 0 2266
ENST00000620342 ZIC2-201 protein_coding Homo_sapiens 0 381

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