C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007JF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ZIC1 UCNEbase 9606 3:146747615-148369526
GeneTranscriptPositionBiotype
ENSG00000152977 (ZIC1)
Zic family member 1 		ENST00000282928 (ZIC1-001) 147409384-147416719 protein_coding
ENST00000472523 (ZIC1-003) 147393422-147507986 processed_transcript
ENST00000474034 (ZIC1-004) 147421327-147510293 processed_transcript
ENST00000481840 (ZIC1-006) 147507941-147509905 processed_transcript
ENST00000488404 (ZIC1-002) 147393895-147413680 protein_coding
ENSG00000205412 (HNRNPA1P20)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 20 		ENST00000484852 (HNRNPA1P20-001) 148166344-148167298 processed_pseudogene
ENSG00000239412 (RPL21P71)
ribosomal protein L21 pseudogene 71 		ENST00000465598 (RPL21P71-001) 147276768-147277252 processed_pseudogene
ENSG00000239922 (RP11-71N10.1)
 ENST00000467198 (RP11-71N10.1-001) 147940004-147943014 lincRNA
ENST00000485006 (RP11-71N10.1-002) 147940020-148006755 lincRNA
ENSG00000241131 (RP11-639B1.1)
 ENST00000490465 (RP11-639B1.1-001) 148078159-148088029 lincRNA
ENSG00000241792 (RP11-501O2.1)
 ENST00000476987 (RP11-501O2.1-001) 148093175-148127233 lincRNA
ENSG00000242440 (RP11-501O2.5)
 ENST00000469812 (RP11-501O2.5-001) 148280891-148312160 lincRNA
ENST00000481334 (RP11-501O2.5-002) 148312147-148399956 lincRNA
ENSG00000243347 (RP11-501O2.4)
 ENST00000460324 (RP11-501O2.4-001) 148195729-148280098 lincRNA
ENSG00000243620 (RP11-649A16.1)
 ENST00000473299 (RP11-649A16.1-001) 146909685-147370656 antisense
ENSG00000244650 (RP11-501O2.3)
 ENST00000470219 (RP11-501O2.3-001) 148191719-148226606 lincRNA
ENST00000477153 (RP11-501O2.3-002) 148160911-148226595 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007JF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ZIC1 UCNEbase 10090 9:90313955-92046042
GeneTranscriptPositionBiotype
ENSMUSG00000032368 (Zic1)
zinc finger protein of the cerebellum 1 		ENSMUST00000034927 (Zic1-001) 91358058-91365768 protein_coding
ENSMUST00000065360 (Zic1-002) 91360500-91365810 protein_coding
ENSMUST00000173121 (Zic1-003) 91361581-91363054 processed_transcript
ENSMUSG00000036972 (Zic4)
zinc finger protein of the cerebellum 4 		ENSMUST00000066384 (Zic4-008) 91378642-91389348 protein_coding
ENSMUST00000085242 (Zic4-012) 91382410-91388044 processed_transcript
ENSMUST00000170572 (Zic4-005) 91369498-91379540 retained_intron
ENSMUST00000172646 (Zic4-001) 91368970-91387793 protein_coding
ENSMUST00000172858 (Zic4-010) 91378197-91384398 retained_intron
ENSMUST00000172978 (Zic4-009) 91368367-91369133 processed_transcript
ENSMUST00000173054 (Zic4-011) 91368812-91379257 protein_coding
ENSMUST00000173342 (Zic4-002) 91362413-91378915 protein_coding
ENSMUST00000173933 (Zic4-003) 91371213-91386958 protein_coding
ENSMUST00000174212 (Zic4-007) 91371004-91379189 protein_coding
ENSMUST00000174611 (Zic4-004) 91368894-91380986 retained_intron
ENSMUST00000174802 (Zic4-006) 91371350-91373923 retained_intron
ENSMUSG00000056904 (Gm5620)
predicted gene 5620 		ENSMUST00000077991 (Gm5620-001) 91097149-91098496 processed_pseudogene
ENSMUSG00000099406 (RP23-480D7.1)
predicted gene 29408 		ENSMUST00000187536 (RP23-480D7.1-001) 90938980-90939195 lincRNA
ENSMUSG00000099512 (RP23-19M11.1)
predicted gene 28703 		ENSMUST00000185312 (RP23-19M11.1-001) 90825302-90828860 lincRNA
ENSMUSG00000100341 (RP23-146C24.2)
predicted gene 29478 		ENSMUST00000191272 (RP23-146C24.2-001) 91404474-91562818 lincRNA
ENSMUSG00000100568 (RP23-186M2.2)
predicted gene 29602 		ENSMUST00000186887 (RP23-186M2.2-001) 91216015-91216456 processed_pseudogene
ENSMUSG00000101608 (RP23-340C13.11)
predicted gene 28652 		ENSMUST00000187008 (RP23-340C13.11-001) 91337601-91340878 lincRNA

Mus musculus Ensembl (GRCm38)

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CIL_0007JF_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ZIC1 UCNEbase 7955 24:4915088-5164087
GeneTranscriptPositionBiotype
ENSDARG00000015567 (zic1)
zic family member 1 (odd-paired homolog, Drosophila) 		ENSDART00000127597 (zic1-001) 5050300-5053485 protein_coding
ENSDARG00000031307 (zic4)
zic family member 4 		ENSDART00000045813 (zic4-201) 5057667-5062134 protein_coding
ENSDART00000114537 (zic4-001) 5057582-5062137 protein_coding

Danio rerio Ensembl (Zv9)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007JF_0001ENSG00000152977ENST00000282928ENST00000472523ENST00000474034ENST00000481840ENST00000488404ENSG00000205412ENST00000484852ENSG00000239412ENST00000465598ENSG00000239922ENST00000467198ENST00000485006ENSG00000241131ENST00000490465ENSG00000241792ENST00000476987ENSG00000242440ENST00000469812ENST00000481334ENSG00000243347ENST00000460324ENSG00000243620ENST00000473299ENSG00000244650ENST00000470219ENST00000477153CIL_0007JF_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_0007JF_0003ENSDARG00000015567ENSDART00000127597ENSDARG00000031307ENSDART00000045813ENSDART00000114537
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007JF_0001ENSG00000152977ENST00000282928ENST00000472523ENST00000474034ENST00000481840ENST00000488404ENSG00000205412ENST00000484852ENSG00000239412ENST00000465598ENSG00000239922ENST00000467198ENST00000485006ENSG00000241131ENST00000490465ENSG00000241792ENST00000476987ENSG00000242440ENST00000469812ENST00000481334ENSG00000243347ENST00000460324ENSG00000243620ENST00000473299ENSG00000244650ENST00000470219ENST00000477153CIL_0007JF_0002ENSMUSG00000032368ENSMUST00000034927ENSMUST00000065360ENSMUST00000173121ENSMUSG00000036972ENSMUST00000066384ENSMUST00000172858ENSMUST00000173054ENSMUST00000174212ENSMUST00000174611ENSMUST00000174802ENSMUSG00000056904ENSMUST00000077991ENSMUSG00000099406ENSMUST00000187536ENSMUSG00000099512ENSMUST00000185312ENSMUSG00000100341ENSMUST00000191272ENSMUSG00000100568ENSMUST00000186887ENSMUSG00000101608ENSMUST00000187008CIL_0007JF_0003ENSDARG00000015567ENSDART00000127597ENSDARG00000031307ENSDART00000045813ENSDART00000114537
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000152977 ENST00000282928 0.519±0.00 0.114±0.00 N/A 1.612±0.59 0.033±0.02 N/A 0.006±0.00 0.020±0.01 0.022±0.00 0.051±0.00 0.042±0.01 0.004±0.00 0.221±0.00 0.048±0.00
ENST00000472523 N/A N/A N/A N/A 0.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.179±0.08 N/A N/A N/A
ENST00000481840 N/A N/A N/A N/A N/A N/A N/A 0.158±0.00 N/A N/A 0.594±0.00 N/A N/A N/A
ENST00000488404 N/A N/A N/A 9.099±0.93 N/A N/A N/A 0.439±0.00 0.667±0.00 N/A 0.552±0.00 N/A N/A 1.349±0.75
ENSG00000205412 ENST00000484852 0.039±0.00 0.097±0.00 N/A 0.028±0.00 0.014±0.00 0.013±0.00 N/A N/A N/A N/A 0.049±0.00 0.017±0.00 N/A 0.122±0.03
ENSG00000239412 ENST00000465598 0.029±0.00 0.120±0.00 N/A 0.061±0.00 N/A 0.055±0.00 N/A 0.089±0.00 0.027±0.00 0.028±0.00 N/A N/A N/A 0.096±0.00
ENSG00000239922 ENST00000467198 0.003±0.00 0.036±0.00 N/A 0.264±0.00 0.039±0.00 0.014±0.00 0.009±0.00 0.006±0.00 0.003±0.00 0.023±0.00 N/A N/A N/A 0.009±0.00
ENST00000485006 N/A N/A N/A 1.279±0.00 N/A N/A 0.033±0.00 N/A N/A N/A N/A N/A N/A 0.210±0.18
ENSG00000241131 ENST00000490465 N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A 6.451±3.50
ENSG00000241792 ENST00000476987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.206±0.02
ENSG00000242440 ENST00000469812 0.053±0.00 N/A N/A N/A N/A N/A 0.049±0.00 N/A 0.047±0.00 0.151±0.00 0.047±0.00 N/A 0.146±0.00 1.107±0.00
ENST00000481334 0.122±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.203±0.00 0.357±0.00
ENSG00000243347 ENST00000460324 N/A N/A N/A 0.055±0.00 N/A 0.018±0.00 N/A N/A 0.017±0.00 N/A N/A N/A N/A 0.492±0.27
ENSG00000243620 ENST00000473299 N/A N/A N/A 0.091±0.00 N/A 0.020±0.00 0.021±0.00 N/A N/A N/A N/A N/A 0.094±0.00 0.042±0.00
ENSG00000244650 ENST00000470219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.101±0.00
ENST00000477153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.100±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032368 ENSMUST00000034927 0.010±0.00 0.022±0.02 N/A 15.481±10.92 0.019±0.00 0.010±0.00 0.014±0.00 N/A 0.023±0.03 0.076±0.03 0.094±0.03 0.064±0.05 0.008±0.01 0.026±0.00
ENSMUST00000065360 N/A 0.022±0.00 0.016±0.00 64.818±0.95 0.058±0.03 N/A 0.025±0.02 0.012±0.00 0.077±0.11 0.053±0.02 0.261±0.11 N/A 0.026±0.02 0.033±0.01
ENSMUST00000173121 N/A N/A N/A N/A 0.358±0.13 N/A N/A N/A 0.133±0.02 0.284±0.17 N/A N/A 0.223±0.00 0.210±0.13
ENSMUSG00000036972 ENSMUST00000066384 N/A N/A 0.006±0.00 16.676±0.15 N/A N/A N/A N/A 0.004±0.00 N/A N/A N/A 0.009±0.00 0.018±0.00
ENSMUST00000085242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172858 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.01
ENSMUST00000172978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173054 N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00
ENSMUST00000173342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174212 N/A N/A N/A N/A 0.189±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.053±0.01 N/A 0.013±0.00 N/A
ENSMUST00000174802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A
ENSMUSG00000056904 ENSMUST00000077991 0.778±0.43 0.086±0.06 0.109±0.03 0.207±0.05 0.386±0.17 0.200±0.09 1.232±0.47 0.104±0.05 0.129±0.07 0.222±0.05 N/A 0.427±0.34 0.084±0.04 0.898±0.36
ENSMUSG00000099406 ENSMUST00000187536 42.059±25.00 11.926±4.95 24.466±8.83 8.113±5.97 27.238±20.15 5.827±1.72 92.534±70.75 9.102±4.63 29.775±24.17 16.030±5.43 1.422±0.75 106.030±126.50 17.639±14.65 48.378±47.31
ENSMUSG00000099512 ENSMUST00000185312 N/A N/A 0.007±0.00 0.087±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A
ENSMUSG00000100341 ENSMUST00000191272 N/A N/A N/A 0.366±0.10 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000100568 ENSMUST00000186887 N/A N/A N/A 0.055±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000101608 ENSMUST00000187008 0.086±0.00 0.232±0.00 N/A 0.057±0.01 0.098±0.00 N/A 0.066±0.00 N/A 0.230±0.00 0.164±0.07 N/A 0.480±0.00 N/A 0.161±0.10
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015567 ENSDART00000127597 N/A N/A N/A 122.040±60.88 N/A N/A N/A 0.121±0.00 0.145±0.00 N/A 9.179±0.00 N/A N/A N/A
ENSDARG00000031307 ENSDART00000045813 N/A N/A N/A 7.403±1.47 N/A N/A N/A 0.211±0.00 N/A N/A 0.245±0.00 N/A N/A N/A
ENSDART00000114537 N/A N/A N/A 10.184±7.29 N/A N/A N/A N/A N/A N/A 1.293±0.00 N/A N/A N/A

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