C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: selenoprotein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037072 Sep15 10090 + 3:144570304-144597680 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000082437 Sep15-001 144570426-144597680 protein_coding
  ENSMUST00000106211 Sep15-002 144570693-144597661 protein_coding
  ENSMUST00000144859 Sep15-003 144570304-144597257 processed_transcript
  ENSMUST00000151086 Sep15-004 144577652-144595432 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000082437ENSMUST00000106211ENSMUST00000144859
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000082437 N/A N/A 167.473±16.03 31.870±22.57 6.854±0.00 15.265±1.20 8.440±3.65 28.069±1.05 67.351±40.40 61.632±5.81 37.417±3.40 84.202±9.87 82.273±60.10 21.638±16.67
ENSMUST00000106211 58.921±3.42 324.146±170.48 N/A 32.930±19.68 101.025±61.05 192.844±27.06 33.068±8.94 99.429±38.68 106.345±66.20 177.900±52.36 N/A 171.564±124.66 35.109±21.71 26.961±2.96
ENSMUST00000144859 56.386±11.48 605.922±316.50 N/A 31.895±11.18 44.565±12.49 N/A 20.983±8.09 41.389±0.00 38.048±7.62 N/A 12.421±1.88 48.853±18.40 49.152±17.68 18.436±4.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UJ CIL_0000UJ_0002 CGP 3:144431103-144597680

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005788 ISS endoplasmic reticulum lumen
GO:0008430 IDA selenium binding
GO:0051084 TAS 'de novo' posttranslational protein folding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074940 sep15 selenoprotein 15 protein_coding Danio_rerio
ENSG00000183291 SEP15 15 kDa selenoprotein isoform 1 precursor protein_coding Homo_sapiens

Loading