C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052069 Galnt6-002 ENSMUSG00000037280 10090 - 15:100691815-100729376 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052069
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052069 0.237±0.21 0.139±0.03 4.515±0.57 0.380±0.52 1.676±1.38 11.993±4.17 0.140±0.07 0.055±0.00 0.173±0.12 1.043±0.19 0.232±0.39 0.157±0.05 4.935±4.11 0.184±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JU CIL_0006JU_0002 CGP 15:100674425-100729376
CIL_0006JV CIL_0006JV_0002 CGP 15:100691813-100823968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356317 GALNT6-001 protein_coding Homo_sapiens 0 2141
ENST00000543196 GALNT6-002 protein_coding Homo_sapiens 0 2141
ENST00000603641 GALNT6-003 nonsense_mediated_decay Homo_sapiens 0 1149
ENST00000603680 GALNT6-004 retained_intron Homo_sapiens 0 811
ENST00000604381 GALNT6-008 protein_coding Homo_sapiens 0 348
ENST00000604847 GALNT6-011 protein_coding Homo_sapiens 0 320

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