C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161514 Galnt6-003 ENSMUSG00000037280 10090 - 15:100692864-100720477 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000161514
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000161514 0.093±0.00 0.416±0.21 0.026±0.00 1.544±0.61 5.454±1.70 0.094±0.00 0.299±0.10 0.065±0.04 0.595±0.00 0.022±0.00 0.331±0.24 0.133±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JU CIL_0006JU_0002 CGP 15:100674425-100729376
CIL_0006JV CIL_0006JV_0002 CGP 15:100691813-100823968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0006486 IEA protein glycosylation
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356317 GALNT6-001 protein_coding Homo_sapiens 0 2141
ENST00000543196 GALNT6-002 protein_coding Homo_sapiens 0 2141
ENST00000603641 GALNT6-003 nonsense_mediated_decay Homo_sapiens 0 1149
ENST00000603680 GALNT6-004 retained_intron Homo_sapiens 0 811
ENST00000604381 GALNT6-008 protein_coding Homo_sapiens 0 348
ENST00000604847 GALNT6-011 protein_coding Homo_sapiens 0 320

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