C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polyhomeotic-like 3 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037652 Phc3 10090 - 3:30899295-30969415 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000046624 Phc3-004 30907062-30969405 nonsense_mediated_decay
  ENSMUST00000064718 Phc3-201 30899295-30969415 protein_coding
  ENSMUST00000099163 Phc3-003 30929296-30969415 protein_coding
  ENSMUST00000108255 Phc3-002 30906784-30969405 protein_coding
  ENSMUST00000124472 Phc3-006 30921023-30933111 retained_intron
  ENSMUST00000129817 Phc3-202 30907311-30969399 protein_coding
  ENSMUST00000150939 Phc3-007 30961103-30965935 retained_intron
  ENSMUST00000152357 Phc3-005 30906985-30969405 nonsense_mediated_decay
  ENSMUST00000165166 Phc3-008 30899524-30914290 processed_transcript
  ENSMUST00000168645 Phc3-001 30899371-30969401 protein_coding
  ENSMUST00000177992 Phc3-203 30907311-30969399 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000046624ENSMUST00000064718ENSMUST00000099163ENSMUST00000129817ENSMUST00000168645
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046624 N/A 2.643±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000064718 1.726±0.00 1.453±0.00 4.445±0.22 2.521±0.48 5.152±0.00 1.850±0.71 N/A 0.607±0.28 2.860±0.00 0.811±0.35 3.294±1.69 1.176±0.36 N/A
ENSMUST00000099163 N/A N/A N/A N/A 8.399±0.00 4.374±1.09 N/A 1.010±0.00 5.255±0.00 N/A 4.346±0.00 N/A 1.392±0.02
ENSMUST00000129817 4.212±0.00 5.072±2.54 N/A N/A 7.439±1.23 5.224±1.59 1.715±0.22 1.720±0.30 9.047±0.00 N/A 9.915±3.13 N/A 1.845±0.53
ENSMUST00000168645 0.808±0.00 5.007±0.83 4.457±0.11 3.558±0.18 2.369±0.18 2.776±0.60 N/A 1.346±0.95 5.911±0.00 0.901±0.36 4.037±1.71 1.795±0.43 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PJ CIL_0001PJ_0002 CGP 3:30855950-30969415
CIL_0002XN CIL_0002XN_0002 CGP 3:30899295-31052741

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0007275 IEA multicellular organismal development
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0015629 IEA actin cytoskeleton
GO:0031519 IDA PcG protein complex
GO:0035102 ISS PRC1 complex
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074604 phc3 polyhomeotic homolog 3 (Drosophila) protein_coding Danio_rerio
ENSDARG00000079167 PHC3 (2 of 2) polyhomeotic homolog 3 (Drosophila) protein_coding Danio_rerio
ENSG00000173889 PHC3 polyhomeotic homolog 3 (Drosophila) protein_coding Homo_sapiens

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