C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polyhomeotic-like 3 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129817 Phc3-202 ENSMUSG00000037652 10090 - 3:30907311-30969399 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungOvaryTestisENSMUST00000129817
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Ovary Testis
ENSMUST00000129817 4.212±0.00 5.072±2.54 7.439±1.23 5.224±1.59 1.715±0.22 1.720±0.30 9.047±0.00 9.915±3.13 1.845±0.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PJ CIL_0001PJ_0002 CGP 3:30855950-30969415
CIL_0002XN CIL_0002XN_0002 CGP 3:30899295-31052741

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0007275 IEA multicellular organismal development
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0031519 IDA PcG protein complex
GO:0035102 ISS PRC1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000465896 PHC3-013 protein_coding Homo_sapiens 0 532
ENST00000466189 PHC3-010 protein_coding Homo_sapiens 0 529
ENST00000467570 PHC3-002 protein_coding Homo_sapiens 0 2543
ENST00000472330 PHC3-012 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000474275 PHC3-003 protein_coding Homo_sapiens 0 571
ENST00000475729 PHC3-011 protein_coding Homo_sapiens 0 939
ENST00000479467 PHC3-007 nonsense_mediated_decay Homo_sapiens 0 1070
ENST00000481639 PHC3-006 protein_coding Homo_sapiens 0 462
ENST00000484068 PHC3-019 protein_coding Homo_sapiens 0 678
ENST00000484931 PHC3-015 protein_coding Homo_sapiens 0 508
ENST00000486042 PHC3-018 protein_coding Homo_sapiens 0 193
ENST00000490723 PHC3-016 retained_intron Homo_sapiens 0 193
ENST00000491258 PHC3-014 retained_intron Homo_sapiens 0 529
ENST00000494943 PHC3-004 protein_coding Homo_sapiens 0 3699
ENST00000495893 PHC3-008 protein_coding Homo_sapiens 0 3744
ENST00000497171 PHC3-017 retained_intron Homo_sapiens 0 551
ENST00000497658 PHC3-005 protein_coding Homo_sapiens 0 529

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