C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polyhomeotic homolog 3 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173889 PHC3 9606 - 3:170086732-170181749 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000465896 PHC3-013 170150607-170181736 protein_coding
  ENST00000466189 PHC3-010 170136534-170181749 protein_coding
  ENST00000467570 PHC3-002 170102567-170181749 protein_coding
  ENST00000472330 PHC3-012 170149134-170181723 nonsense_mediated_decay
  ENST00000474275 PHC3-003 170147248-170181728 protein_coding
  ENST00000475729 PHC3-011 170136596-170181745 protein_coding
  ENST00000479467 PHC3-007 170136366-170181747 nonsense_mediated_decay
  ENST00000481639 PHC3-006 170170732-170181747 protein_coding
  ENST00000484068 PHC3-019 170086732-170102899 protein_coding
  ENST00000484931 PHC3-015 170129308-170181730 protein_coding
  ENST00000486042 PHC3-018 170117123-170128807 protein_coding
  ENST00000490723 PHC3-016 170171263-170172632 retained_intron
  ENST00000491258 PHC3-014 170171086-170181733 retained_intron
  ENST00000494943 PHC3-004 170095221-170181733 protein_coding
  ENST00000495893 PHC3-008 170087584-170181747 protein_coding
  ENST00000497171 PHC3-017 170129385-170136670 retained_intron
  ENST00000497658 PHC3-005 170169718-170181733 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000467570ENST00000494943ENST00000495893
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000467570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.766±0.00
ENST00000494943 N/A 3.512±0.00 3.607±0.00 5.690±0.00 5.547±0.00 2.466±0.00 1.753±0.00 N/A 7.715±0.00 0.967±0.00 3.754±0.00 0.317±0.00 N/A
ENST00000495893 1.698±0.00 1.827±0.00 1.875±0.00 1.539±0.29 2.107±0.04 1.937±0.00 2.597±0.00 2.952±2.59 4.318±1.50 1.467±0.00 1.330±0.68 0.582±0.04 3.005±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PJ CIL_0001PJ_0001 CGP 3:170037929-170181749
CIL_0002XN CIL_0002XN_0001 CGP 3:170086732-170305981

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0015629 IDA actin cytoskeleton
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074604 phc3 polyhomeotic homolog 3 (Drosophila) protein_coding Danio_rerio
ENSDARG00000079167 PHC3 (2 of 2) polyhomeotic homolog 3 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000037652 Phc3 polyhomeotic-like 3 (Drosophila) protein_coding Mus_musculus

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