C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 3110057O12 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037818 3110057O12Rik 10090 + 3:40846970-40938138 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060415 3110057O12Rik-007 40894263-40917098 protein_coding
  ENSMUST00000108077 3110057O12Rik-201 40894322-40937137 protein_coding
  ENSMUST00000108078 3110057O12Rik-202 40846970-40936307 protein_coding
  ENSMUST00000159057 3110057O12Rik-004 40930545-40936695 processed_transcript
  ENSMUST00000159227 3110057O12Rik-002 40894277-40938136 nonsense_mediated_decay
  ENSMUST00000159274 3110057O12Rik-005 40894306-40923778 protein_coding
  ENSMUST00000159421 3110057O12Rik-006 40894345-40917406 protein_coding
  ENSMUST00000159774 3110057O12Rik-001 40894145-40938138 protein_coding
  ENSMUST00000161111 3110057O12Rik-003 40894324-40937154 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060415ENSMUST00000108077ENSMUST00000108078ENSMUST00000159057ENSMUST00000159227ENSMUST00000159421ENSMUST00000159774ENSMUST00000161111
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060415 N/A N/A N/A N/A 2.661±0.72 1.738±0.00 N/A N/A N/A 1.647±0.00 N/A 0.648±0.17 N/A N/A
ENSMUST00000108077 N/A N/A N/A N/A N/A 0.427±0.00 N/A N/A N/A N/A 0.520±0.12 N/A 0.500±0.00 N/A
ENSMUST00000108078 0.539±0.09 0.243±0.00 N/A 0.505±0.00 0.702±0.02 0.636±0.00 4.363±0.80 N/A 1.362±0.49 0.423±0.00 0.902±0.27 0.629±0.40 1.345±0.67 2.190±0.61
ENSMUST00000159057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.426±0.00 N/A
ENSMUST00000159227 N/A N/A 0.442±0.00 N/A 0.746±0.14 0.590±0.04 N/A N/A N/A N/A 0.201±0.00 0.360±0.08 N/A 0.574±0.13
ENSMUST00000159421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.099±0.39 N/A N/A
ENSMUST00000159774 0.205±0.00 0.443±0.15 1.130±0.07 2.879±0.12 N/A 0.569±0.23 N/A 1.015±0.00 1.129±0.40 0.547±0.00 0.239±0.00 0.662±0.25 N/A 0.845±0.00
ENSMUST00000161111 N/A N/A N/A 0.631±0.00 N/A 0.589±0.00 N/A N/A N/A 0.511±0.00 N/A N/A N/A 0.624±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001O CIL_00001O_0002 CGP 3:40818070-40938138

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029975 C14H4orf29 chromosome 4 open reading frame 29 protein_coding Danio_rerio
ENSG00000164074 C4orf29 chromosome 4 open reading frame 29 protein_coding Homo_sapiens

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