C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: jumonji domain containing 1C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037876 Jmjd1c 10090 + 10:67096125-67256326 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051446 Jmjd1c-201 67127258-67256326 protein_coding
  ENSMUST00000173187 Jmjd1c-011 67217740-67218356 retained_intron
  ENSMUST00000173236 Jmjd1c-004 67238922-67245418 retained_intron
  ENSMUST00000173295 Jmjd1c-010 67096405-67158243 retained_intron
  ENSMUST00000173661 Jmjd1c-005 67185749-67216171 retained_intron
  ENSMUST00000173689 Jmjd1c-001 67185750-67256318 protein_coding
  ENSMUST00000173762 Jmjd1c-003 67238148-67252672 protein_coding
  ENSMUST00000173949 Jmjd1c-006 67185753-67191750 retained_intron
  ENSMUST00000174062 Jmjd1c-007 67096125-67191748 retained_intron
  ENSMUST00000174317 Jmjd1c-008 67096492-67224962 protein_coding
  ENSMUST00000174408 Jmjd1c-009 67127258-67256318 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051446ENSMUST00000173236ENSMUST00000173295ENSMUST00000173689ENSMUST00000173762ENSMUST00000174317ENSMUST00000174408
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051446 N/A 1.649±0.00 N/A N/A 1.263±0.21 2.170±0.00 N/A 0.736±0.00 N/A N/A N/A 2.286±0.84 N/A 1.216±0.00
ENSMUST00000173236 N/A N/A N/A 8.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173295 N/A 2.364±0.95 N/A N/A N/A 4.675±0.07 N/A N/A N/A N/A N/A 3.476±0.29 N/A N/A
ENSMUST00000173689 2.218±0.88 1.660±0.57 N/A N/A 2.342±0.83 2.473±0.65 0.786±0.18 1.533±0.49 1.639±0.76 3.107±0.19 0.591±0.20 2.569±0.88 1.341±0.22 N/A
ENSMUST00000173762 N/A N/A 6.076±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174317 2.649±1.34 6.005±0.65 N/A N/A 5.593±1.27 5.956±0.94 1.902±0.22 2.184±0.34 1.891±0.41 4.965±0.78 N/A 6.261±1.79 N/A 1.663±0.08
ENSMUST00000174408 2.403±0.96 N/A 7.143±1.74 8.099±1.52 1.693±0.97 1.649±0.45 2.046±0.29 1.294±0.49 1.794±0.48 2.612±0.30 2.018±0.41 4.436±3.59 6.185±2.96 3.853±1.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016568 IEA chromatin modification
GO:0046872 IEA metal ion binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077805 JMJD1C jumonji domain containing 1C protein_coding Danio_rerio
ENSG00000171988 JMJD1C jumonji domain containing 1C protein_coding Homo_sapiens

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