C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: jumonji domain containing 1C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171988 JMJD1C 9606 - 10:63167221-63465881 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000327520 JMJD1C-002 63176800-63207725 protein_coding
  ENST00000399262 JMJD1C-001 63167221-63465881 protein_coding
  ENST00000402544 JMJD1C-010 63167348-63269187 processed_transcript
  ENST00000467356 JMJD1C-003 63167221-63176555 retained_intron
  ENST00000469152 JMJD1C-007 63215424-63268875 processed_transcript
  ENST00000483298 JMJD1C-006 63193110-63194694 processed_transcript
  ENST00000489372 JMJD1C-008 63215438-63269253 processed_transcript
  ENST00000490669 JMJD1C-004 63192939-63193649 processed_transcript
  ENST00000497922 JMJD1C-005 63189287-63193337 processed_transcript
  ENST00000542921 JMJD1C-201 63167590-63269066 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327520ENST00000399262ENST00000402544ENST00000467356ENST00000542921
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327520 N/A N/A N/A 2.994±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000399262 1.871±0.00 1.467±0.00 1.011±0.00 1.622±0.49 1.878±0.86 0.854±0.00 1.701±0.00 0.716±0.00 2.139±0.70 1.195±0.22 3.814±2.24 0.973±0.37 4.225±0.86
ENST00000402544 N/A N/A 0.715±0.00 N/A N/A N/A N/A N/A N/A 0.482±0.00 N/A N/A N/A
ENST00000467356 N/A 4.277±0.00 N/A 3.383±0.00 N/A N/A 6.204±0.00 N/A N/A N/A 10.168±0.00 1.487±0.00 N/A
ENST00000542921 2.665±0.00 1.355±0.00 1.243±0.00 2.482±1.30 2.204±0.00 1.264±0.05 0.855±0.00 2.011±0.00 4.561±0.00 0.642±0.00 1.893±0.68 N/A 2.517±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NX CIL_0007NX_0001 UCNEbase 10:63000173-63167486
CIL_0000H2 CIL_0000H2_0002 CGP 10:63133247-63465881

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 NAS intracellular
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007596 TAS blood coagulation
GO:0016568 IEA chromatin modification
GO:0046872 IEA metal ion binding
GO:0046966 TAS thyroid hormone receptor binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077805 JMJD1C jumonji domain containing 1C protein_coding Danio_rerio
ENSMUSG00000037876 Jmjd1c jumonji domain containing 1C protein_coding Mus_musculus

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