C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 55
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102494 Ccdc55-001 ENSMUSG00000037958 10090 - 11:77044292-77078435 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102494
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102494 0.852±0.36 0.456±0.14 2.378±0.02 6.328±5.70 0.552±0.27 0.968±0.14 0.870±0.10 1.112±0.33 2.007±1.63 1.315±0.27 3.004±0.42 3.808±6.89 10.361±7.56 18.579±30.33

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003729 ISS mRNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006397 IEA mRNA processing
GO:0006913 ISS nucleocytoplasmic transport
GO:0008380 IEA RNA splicing
GO:0016607 ISS nuclear speck
GO:0030529 ISS ribonucleoprotein complex
GO:0032502 ISS developmental process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000247026 NSRP1-001 protein_coding Homo_sapiens 0 1223
ENST00000394826 NSRP1-005 nonsense_mediated_decay Homo_sapiens 0 1051
ENST00000444067 NSRP1P1-001 processed_pseudogene Homo_sapiens 0 876
ENST00000467446 NSRP1-009 retained_intron Homo_sapiens 3e-26 122
ENST00000475652 NSRP1-002 nonsense_mediated_decay Homo_sapiens 0 809
ENST00000479218 NSRP1-007 protein_coding Homo_sapiens 3e-26 122
ENST00000540900 NSRP1-004 processed_transcript Homo_sapiens 0 1048
ENST00000577289 NSRP1-015 processed_transcript Homo_sapiens 0 505
ENST00000580103 NSRP1-008 protein_coding Homo_sapiens 0 725
ENST00000581048 NSRP1-011 processed_transcript Homo_sapiens 0 346
ENST00000583301 NSRP1-012 processed_transcript Homo_sapiens 7e-38 161
ENST00000584154 NSRP1-010 nonsense_mediated_decay Homo_sapiens 0 401
ENST00000584317 NSRP1-013 nonsense_mediated_decay Homo_sapiens 0 244
ENST00000584423 NSRP1-006 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000585881 NSRP1-003 protein_coding Homo_sapiens 0 270
ENST00000588614 NSRP1-014 protein_coding Homo_sapiens 0 536
ENST00000589608 NSRP1-016 nonsense_mediated_decay Homo_sapiens 0 189
ENST00000612959 NSRP1-201 protein_coding Homo_sapiens 0 1048

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