C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: primase and polymerase (DNA-directed)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040468 Primpol-001 ENSMUSG00000038225 10090 - 8:46575579-46617200 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000040468
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000040468 0.236±0.00 0.816±0.41 0.942±0.04 0.501±0.00 0.104±0.01 0.175±0.00 1.575±1.06 0.352±0.11 1.635±1.05 1.435±0.25 2.253±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097G CIL_00097G_0002 VISTA 8:46470571-47072246
CIL_00094W CIL_00094W_0002 VISTA 8:46548055-47151393

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 ISS chromatin binding
GO:0003887 ISS DNA-directed DNA polymerase activity
GO:0003896 ISS DNA primase activity
GO:0005634 ISS nucleus
GO:0005759 ISS mitochondrial matrix
GO:0006264 ISS mitochondrial DNA replication
GO:0006269 IEA DNA replication, synthesis of RNA primer
GO:0009411 ISS response to UV
GO:0019985 ISS translesion synthesis
GO:0031297 IEA replication fork processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281453 CENPU-001 protein_coding Homo_sapiens 3e-35 154
ENST00000314970 PRIMPOL-001 protein_coding Homo_sapiens 0 688
ENST00000502461 CENPU-005 retained_intron Homo_sapiens 7e-38 161
ENST00000503752 PRIMPOL-005 protein_coding Homo_sapiens 0 688
ENST00000506278 PRIMPOL-006 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000508001 PRIMPOL-011 protein_coding Homo_sapiens 0 409
ENST00000508095 CENPU-006 retained_intron Homo_sapiens 1e-35 154
ENST00000509002 PRIMPOL-004 nonsense_mediated_decay Homo_sapiens 0 425
ENST00000509538 PRIMPOL-008 retained_intron Homo_sapiens 3.00018e-42 176
ENST00000510146 CENPU-003 nonsense_mediated_decay Homo_sapiens 3e-35 154
ENST00000512834 PRIMPOL-002 protein_coding Homo_sapiens 0 675
ENST00000515152 PRIMPOL-007 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000515774 PRIMPOL-003 protein_coding Homo_sapiens 0 688

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