C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: special AT-rich sequence binding protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038331 Satb2 10090 - 1:56793981-56978650 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042857 Satb2-002 56793981-56972502 protein_coding
  ENSMUST00000114415 Satb2-001 56793986-56971858 protein_coding
  ENSMUST00000176759 Satb2-005 56948134-56969840 protein_coding
  ENSMUST00000177282 Satb2-004 56969740-56978650 protein_coding
  ENSMUST00000177424 Satb2-003 56793988-56969872 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042857ENSMUST00000114415ENSMUST00000177424
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042857 0.029±0.02 0.360±0.13 0.041±0.01 1.117±0.38 0.079±0.03 8.413±0.19 0.021±0.00 0.558±0.19 0.042±0.02 0.107±0.02 0.088±0.00 0.174±0.10 0.273±0.21 0.093±0.00
ENSMUST00000114415 0.030±0.00 N/A 0.073±0.00 1.040±0.34 0.038±0.00 N/A 0.043±0.02 0.276±0.00 0.026±0.00 0.030±0.00 0.040±0.01 0.113±0.04 0.256±0.13 0.228±0.00
ENSMUST00000177424 0.137±0.09 0.247±0.00 0.090±0.00 0.754±0.13 0.047±0.03 8.614±0.00 0.032±0.02 1.394±0.37 0.051±0.03 0.082±0.05 0.053±0.01 0.106±0.02 0.184±0.00 0.269±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007O4 CIL_0007O4_0003 UCNEbase 1:55914497-56961323

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IC nuclear chromatin
GO:0001764 IMP neuron migration
GO:0002076 IGI osteoblast development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0009880 IMP embryonic pattern specification
GO:0010468 IMP regulation of gene expression
GO:0021902 IGI commitment of neuronal cell to specific neuron type in forebrain
GO:0043565 IGI sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0051216 IMP cartilage development
GO:0060021 IMP palate development
GO:0071310 IDA cellular response to organic substance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061885 satb2 SATB homeobox 2 protein_coding Danio_rerio
ENSG00000119042 SATB2 SATB homeobox 2 protein_coding Homo_sapiens

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