C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: special AT-rich sequence binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042857 Satb2-002 ENSMUSG00000038331 10090 - 1:56793981-56972502 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042857
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042857 0.029±0.02 0.360±0.13 0.041±0.01 1.117±0.38 0.079±0.03 8.413±0.19 0.021±0.00 0.558±0.19 0.042±0.02 0.107±0.02 0.088±0.00 0.174±0.10 0.273±0.21 0.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007O4 CIL_0007O4_0003 UCNEbase 1:55914497-56961323

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IC nuclear chromatin
GO:0001764 IMP neuron migration
GO:0002076 IGI osteoblast development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0009880 IMP embryonic pattern specification
GO:0010468 IMP regulation of gene expression
GO:0021902 IGI commitment of neuronal cell to specific neuron type in forebrain
GO:0043565 IGI sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0051216 IMP cartilage development
GO:0060021 IMP palate development
GO:0071310 IDA cellular response to organic substance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260926 SATB2-003 protein_coding Homo_sapiens 0 3173
ENST00000417098 SATB2-001 protein_coding Homo_sapiens 0 3173
ENST00000428695 SATB2-007 protein_coding Homo_sapiens 0 2135
ENST00000440919 SATB2-005 nonsense_mediated_decay Homo_sapiens 0 673
ENST00000443023 SATB2-010 protein_coding Homo_sapiens 0 5110
ENST00000457245 SATB2-002 protein_coding Homo_sapiens 0 2673
ENST00000463386 SATB2-004 processed_transcript Homo_sapiens 0.000000000001 77
ENST00000473517 SATB2-009 retained_intron Homo_sapiens 0 675
ENST00000483346 SATB2-006 retained_intron Homo_sapiens 0 889
ENST00000484124 SATB2-008 processed_transcript Homo_sapiens 0 542
ENST00000614512 SATB2-201 protein_coding Homo_sapiens 0 2632

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