C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: special AT-rich sequence binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177282 Satb2-004 ENSMUSG00000038331 10090 - 1:56969740-56978650 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007O4 CIL_0007O4_0003 UCNEbase 1:55914497-56961323

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IDA histone deacetylase complex
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IC nuclear chromatin
GO:0001764 IMP neuron migration
GO:0002076 IGI osteoblast development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006338 IDA chromatin remodeling
GO:0009880 IMP embryonic pattern specification
GO:0010468 IMP regulation of gene expression
GO:0021902 IGI commitment of neuronal cell to specific neuron type in forebrain
GO:0043565 IGI sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0051216 IMP cartilage development
GO:0060021 IMP palate development
GO:0071310 IDA cellular response to organic substance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260926 SATB2-003 protein_coding Homo_sapiens 0 508
ENST00000417098 SATB2-001 protein_coding Homo_sapiens 0 217
ENST00000428695 SATB2-007 protein_coding Homo_sapiens 0 207
ENST00000440919 SATB2-005 nonsense_mediated_decay Homo_sapiens 0 217
ENST00000443023 SATB2-010 protein_coding Homo_sapiens 0 217
ENST00000457245 SATB2-002 protein_coding Homo_sapiens 0 300
ENST00000463386 SATB2-004 processed_transcript Homo_sapiens 0 196
ENST00000614512 SATB2-201 protein_coding Homo_sapiens 0 508

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