C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SATB homeobox 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000119042 SATB2 9606 - 2:199269500-199471266 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000260926 SATB2-003 199269508-199465108 protein_coding
  ENST00000417098 SATB2-001 199269500-199458096 protein_coding
  ENST00000428695 SATB2-007 199271975-199456088 protein_coding
  ENST00000440919 SATB2-005 199395831-199457612 nonsense_mediated_decay
  ENST00000443023 SATB2-010 199269508-199458745 protein_coding
  ENST00000457245 SATB2-002 199272150-199471266 protein_coding
  ENST00000463386 SATB2-004 199456053-199465167 processed_transcript
  ENST00000473517 SATB2-009 199308860-199329035 retained_intron
  ENST00000483346 SATB2-006 199346866-199368943 retained_intron
  ENST00000484124 SATB2-008 199368610-199423915 processed_transcript
  ENST00000614512 SATB2-201 199269500-199465108 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260926ENST00000417098ENST00000428695ENST00000440919ENST00000443023ENST00000457245ENST00000483346ENST00000484124ENST00000614512
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260926 N/A N/A N/A 1.534±0.00 N/A 9.505±0.00 0.040±0.00 N/A 0.405±0.00 N/A 0.148±0.00 N/A 0.127±0.00 N/A
ENST00000417098 0.544±0.00 0.345±0.00 1.447±0.00 3.978±1.12 1.656±0.00 14.880±0.00 0.105±0.00 N/A N/A N/A 0.235±0.00 0.433±0.32 0.200±0.10 0.912±0.00
ENST00000428695 0.787±0.00 0.596±0.00 N/A N/A N/A N/A 0.246±0.00 N/A N/A N/A 0.305±0.00 N/A N/A N/A
ENST00000440919 N/A N/A N/A N/A 2.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443023 0.437±0.00 0.110±0.00 N/A N/A 0.760±0.00 N/A 0.141±0.00 0.358±0.00 0.235±0.00 0.060±0.00 0.353±0.00 0.182±0.09 N/A 0.513±0.00
ENST00000457245 N/A N/A N/A 16.219±0.00 2.470±0.00 N/A 0.063±0.00 0.182±0.00 0.302±0.00 N/A N/A N/A N/A N/A
ENST00000483346 N/A N/A N/A N/A 1.840±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484124 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.580±0.00 N/A N/A
ENST00000614512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.715±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JH CIL_0000JH_0002 CGP 2:197804702-199471266
CIL_0007O4 CIL_0007O4_0002 UCNEbase 2:198996573-199448043

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 IEA histone deacetylase complex
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001764 IEA neuron migration
GO:0002076 IEA osteoblast development
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009880 IEA embryonic pattern specification
GO:0010468 IEA regulation of gene expression
GO:0021902 IEA commitment of neuronal cell to specific neuron type in forebrain
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0051216 IEA cartilage development
GO:0060021 IEA palate development
GO:0071310 IEA cellular response to organic substance

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061885 satb2 SATB homeobox 2 protein_coding Danio_rerio
ENSMUSG00000038331 Satb2 special AT-rich sequence binding protein 2 protein_coding Mus_musculus

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