C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small G protein signaling modulator 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038351 Sgsm2 10090 - 11:74849261-74897060 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057631 Sgsm2-001 74849261-74897060 protein_coding
  ENSMUST00000081799 Sgsm2-002 74849266-74897060 protein_coding
  ENSMUST00000123573 Sgsm2-003 74856567-74860575 retained_intron
  ENSMUST00000148421 Sgsm2-005 74867439-74868388 retained_intron
  ENSMUST00000156287 Sgsm2-004 74867429-74869092 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057631ENSMUST00000081799
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057631 4.211±1.26 15.023±1.97 7.416±1.85 28.074±10.07 5.998±2.48 10.996±1.79 2.218±0.47 6.569±1.09 2.604±1.58 5.444±0.80 0.339±0.12 9.116±4.28 2.927±1.83 7.513±3.46
ENSMUST00000081799 1.947±0.24 1.973±0.00 2.654±0.00 7.503±0.67 0.936±0.35 3.935±1.02 0.748±0.01 2.194±0.12 0.567±0.15 2.361±0.21 0.169±0.04 2.925±0.63 1.017±0.23 2.944±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0017137 IEA Rab GTPase binding
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0033126 IEA positive regulation of GTP catabolic process
GO:0034499 IEA late endosome to Golgi transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063307 SGSM2 small G protein signaling modulator 2 protein_coding Danio_rerio
ENSG00000141258 SGSM2 small G protein signaling modulator 2 protein_coding Homo_sapiens

Loading