C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small G protein signaling modulator 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081799 Sgsm2-002 ENSMUSG00000038351 10090 - 11:74849266-74897060 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081799
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081799 1.947±0.24 1.973±0.00 2.654±0.00 7.503±0.67 0.936±0.35 3.935±1.02 0.748±0.01 2.194±0.12 0.567±0.15 2.361±0.21 0.169±0.04 2.925±0.63 1.017±0.23 2.944±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0032851 IEA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268989 SGSM2-002 protein_coding Homo_sapiens 0 4021
ENST00000426855 SGSM2-001 protein_coding Homo_sapiens 0 2069
ENST00000570431 SGSM2-010 protein_coding Homo_sapiens 0 420
ENST00000572841 SGSM2-008 retained_intron Homo_sapiens 0 789
ENST00000572925 SGSM2-013 protein_coding Homo_sapiens 8e-27 124
ENST00000573062 SGSM2-004 nonsense_mediated_decay Homo_sapiens 0 763
ENST00000573717 SGSM2-015 retained_intron Homo_sapiens 0 270
ENST00000573851 SGSM2-012 protein_coding Homo_sapiens 0 300
ENST00000574250 SGSM2-014 retained_intron Homo_sapiens 0 261
ENST00000574563 SGSM2-003 protein_coding Homo_sapiens 0 1951
ENST00000574857 SGSM2-005 retained_intron Homo_sapiens 0 368
ENST00000575367 SGSM2-007 retained_intron Homo_sapiens 0 416

Loading