C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small G protein signaling modulator 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057631 Sgsm2-001 ENSMUSG00000038351 10090 - 11:74849261-74897060 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057631
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057631 4.211±1.26 15.023±1.97 7.416±1.85 28.074±10.07 5.998±2.48 10.996±1.79 2.218±0.47 6.569±1.09 2.604±1.58 5.444±0.80 0.339±0.12 9.116±4.28 2.927±1.83 7.513±3.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RP CIL_0007RP_0002 VISTA 11:74746156-75348336
CIL_00093G CIL_00093G_0002 VISTA 11:74749027-75350435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0017137 IEA Rab GTPase binding
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0033126 IEA positive regulation of GTP catabolic process
GO:0034499 IEA late endosome to Golgi transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268989 SGSM2-002 protein_coding Homo_sapiens 0 2069
ENST00000426855 SGSM2-001 protein_coding Homo_sapiens 0 3779
ENST00000570431 SGSM2-010 protein_coding Homo_sapiens 0 420
ENST00000572841 SGSM2-008 retained_intron Homo_sapiens 0 789
ENST00000572925 SGSM2-013 protein_coding Homo_sapiens 8e-27 124
ENST00000573062 SGSM2-004 nonsense_mediated_decay Homo_sapiens 0 763
ENST00000573717 SGSM2-015 retained_intron Homo_sapiens 0 270
ENST00000573851 SGSM2-012 protein_coding Homo_sapiens 0 300
ENST00000574250 SGSM2-014 retained_intron Homo_sapiens 0 261
ENST00000574563 SGSM2-003 protein_coding Homo_sapiens 0 3567
ENST00000574857 SGSM2-005 retained_intron Homo_sapiens 0 634

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