C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TBC1 domain family, member 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038520 Tbc1d17 10090 - 7:44840901-44849079 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047085 Tbc1d17-002 44841025-44849075 protein_coding
  ENSMUST00000130081 Tbc1d17-004 44841033-44848890 retained_intron
  ENSMUST00000133846 Tbc1d17-006 44848275-44848594 retained_intron
  ENSMUST00000139947 Tbc1d17-003 44840901-44848911 retained_intron
  ENSMUST00000142098 Tbc1d17-005 44848026-44848895 retained_intron
  ENSMUST00000145959 Tbc1d17-001 44841032-44849079 nonsense_mediated_decay
  ENSMUST00000149921 Tbc1d17-008 44843380-44844324 retained_intron
  ENSMUST00000153161 Tbc1d17-007 44844577-44846000 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047085ENSMUST00000130081ENSMUST00000139947ENSMUST00000145959
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047085 28.991±5.86 43.331±2.54 22.518±1.62 24.142±3.99 34.610±12.93 27.050±4.49 11.442±2.67 27.542±5.24 17.524±5.17 27.745±3.55 18.208±1.21 39.382±13.07 20.362±2.52 6.782±2.02
ENSMUST00000130081 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.321±0.49 N/A N/A
ENSMUST00000139947 N/A N/A N/A N/A 3.987±0.00 N/A N/A N/A N/A 12.015±0.00 N/A 6.473±0.17 11.566±0.00 N/A
ENSMUST00000145959 N/A N/A N/A 13.149±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LB CIL_0006LB_0002 CGP 7:44840901-44855421

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005097 IEA Rab GTPase activator activity
GO:0005515 IEA protein binding
GO:0005829 IEA cytosol
GO:0006914 IEA autophagy
GO:0015031 IEA protein transport
GO:0031410 IEA cytoplasmic vesicle
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0042147 IEA retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005927 tbc1d17 TBC1 domain family, member 17 protein_coding Danio_rerio
ENSG00000104946 TBC1D17 TBC1 domain family, member 17 protein_coding Homo_sapiens

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