C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TBC1 domain family, member 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000104946 TBC1D17 9606 + 19:49877425-49888749 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000221543 TBC1D17-001 49877425-49888744 protein_coding
  ENST00000535102 TBC1D17-003 49877666-49888743 protein_coding
  ENST00000594984 TBC1D17-006 49882266-49888707 nonsense_mediated_decay
  ENST00000594996 TBC1D17-002 49877702-49883002 nonsense_mediated_decay
  ENST00000596243 TBC1D17-004 49878550-49888748 retained_intron
  ENST00000598789 TBC1D17-009 49878076-49881464 processed_transcript
  ENST00000599049 TBC1D17-005 49878187-49885534 protein_coding
  ENST00000600354 TBC1D17-007 49886551-49888743 retained_intron
  ENST00000622860 TBC1D17-201 49877425-49888749 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000221543ENST00000535102ENST00000594984ENST00000596243ENST00000599049ENST00000622860
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000221543 15.368±0.00 14.480±0.00 N/A 15.504±0.00 14.503±0.00 10.722±0.00 5.460±0.00 11.694±0.00 N/A N/A 18.433±0.00 16.774±0.00 14.816±0.00 7.102±0.00
ENST00000535102 15.590±0.00 N/A N/A N/A N/A 8.047±0.00 3.925±3.69 2.329±0.00 N/A 9.594±0.00 68.783±0.00 26.886±0.00 33.688±0.86 N/A
ENST00000594984 N/A N/A N/A 15.205±0.00 N/A 16.275±0.00 N/A 25.649±0.00 N/A N/A 31.474±0.00 6.131±0.00 N/A N/A
ENST00000596243 N/A N/A 0.607±0.00 1.067±0.00 1.334±0.00 1.333±0.00 0.331±0.00 N/A 1.179±0.00 5.772±0.00 N/A 6.551±4.36 N/A N/A
ENST00000599049 N/A 12.955±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622860 N/A N/A N/A N/A N/A 0.613±0.00 N/A N/A 0.776±0.00 N/A 4.229±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0006914 IEA autophagy
GO:0015031 IEA protein transport
GO:0031410 IEA cytoplasmic vesicle
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0042147 IMP retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005927 tbc1d17 TBC1 domain family, member 17 protein_coding Danio_rerio
ENSMUSG00000038520 Tbc1d17 TBC1 domain family, member 17 protein_coding Mus_musculus

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