C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TBC1 domain family, member 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047085 Tbc1d17-002 ENSMUSG00000038520 10090 - 7:44841025-44849075 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047085
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047085 28.991±5.86 43.331±2.54 22.518±1.62 24.142±3.99 34.610±12.93 27.050±4.49 11.442±2.67 27.542±5.24 17.524±5.17 27.745±3.55 18.208±1.21 39.382±13.07 20.362±2.52 6.782±2.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LB CIL_0006LB_0002 CGP 7:44840901-44855421

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005097 IEA Rab GTPase activator activity
GO:0005515 IEA protein binding
GO:0005829 IEA cytosol
GO:0006914 IEA autophagy
GO:0015031 IEA protein transport
GO:0031410 IEA cytoplasmic vesicle
GO:0032851 IEA positive regulation of Rab GTPase activity
GO:0042147 IEA retrograde transport, endosome to Golgi

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000221543 TBC1D17-001 protein_coding Homo_sapiens 0 1997
ENST00000535102 TBC1D17-003 protein_coding Homo_sapiens 0 1834
ENST00000594984 TBC1D17-006 nonsense_mediated_decay Homo_sapiens 0 1066
ENST00000594996 TBC1D17-002 nonsense_mediated_decay Homo_sapiens 0 802
ENST00000596243 TBC1D17-004 retained_intron Homo_sapiens 0 1777
ENST00000598789 TBC1D17-009 processed_transcript Homo_sapiens 0 453
ENST00000599049 TBC1D17-005 protein_coding Homo_sapiens 0 1404
ENST00000600354 TBC1D17-007 retained_intron Homo_sapiens 0 475
ENST00000622860 TBC1D17-201 protein_coding Homo_sapiens 0 1964

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