C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sushi domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038578 Susd1 10090 - 4:59314683-59438633 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040166 Susd1-201 59314683-59438633 protein_coding
  ENSMUST00000107544 Susd1-001 59314754-59438633 protein_coding
  ENSMUST00000136077 Susd1-002 59331957-59362982 retained_intron
  ENSMUST00000136562 Susd1-003 59329210-59333022 retained_intron
  ENSMUST00000136942 Susd1-004 59314683-59315966 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040166ENSMUST00000107544ENSMUST00000136562ENSMUST00000136942
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040166 2.344±1.86 0.813±0.33 2.208±0.82 0.460±0.07 2.276±1.03 0.179±0.03 0.120±0.00 1.696±0.36 4.272±3.30 0.888±0.21 0.050±0.04 7.488±2.30 6.426±3.06 0.866±0.17
ENSMUST00000107544 N/A 0.784±0.16 N/A N/A 0.457±0.00 0.357±0.12 0.101±0.01 N/A N/A 0.347±0.00 0.018±0.00 2.309±0.00 4.220±0.00 0.359±0.00
ENSMUST00000136562 N/A N/A N/A N/A N/A N/A 0.392±0.00 N/A N/A N/A 0.081±0.02 N/A N/A N/A
ENSMUST00000136942 N/A N/A N/A 0.821±0.00 3.037±0.73 0.950±0.46 N/A N/A 0.899±0.00 N/A 0.101±0.08 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XW CIL_0000XW_0002 CGP 4:59189257-59438633
CIL_0005X7 CIL_0005X7_0002 CGP 4:59314683-59549364

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005509 IEA calcium ion binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058839 SUSD1 (1 of 3) sushi domain containing 1 protein_coding Danio_rerio
ENSDARG00000094311 SUSD1 (2 of 3) sushi domain containing 1 protein_coding Danio_rerio
ENSG00000106868 SUSD1 sushi domain containing 1 protein_coding Homo_sapiens

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