C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sushi domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106868 SUSD1 9606 - 9:112040785-112175408 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000355396 SUSD1-002 112040785-112175185 protein_coding
  ENST00000374263 SUSD1-201 112040785-112175297 protein_coding
  ENST00000374264 SUSD1-006 112041079-112175267 protein_coding
  ENST00000374270 SUSD1-003 112040785-112175408 protein_coding
  ENST00000415074 SUSD1-005 112098582-112142466 protein_coding
  ENST00000475283 SUSD1-001 112041083-112058471 nonsense_mediated_decay
  ENST00000482851 SUSD1-004 112124296-112146176 processed_transcript
  ENST00000528773 SUSD1-008 112102176-112112083 retained_intron
  ENST00000529933 SUSD1-007 112080074-112104958 processed_transcript
  ENST00000532348 SUSD1-009 112112792-112142588 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000355396ENST00000374263ENST00000374264ENST00000374270ENST00000415074ENST00000475283ENST00000482851ENST00000532348
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000355396 N/A N/A N/A 2.424±1.21 N/A 0.504±0.00 N/A N/A N/A N/A 0.242±0.00 1.223±0.00 2.002±0.01 N/A
ENST00000374263 N/A N/A N/A 1.472±0.00 1.299±0.00 N/A 1.049±0.00 0.443±0.00 0.453±0.05 1.299±0.52 N/A 6.565±0.00 1.682±0.00 N/A
ENST00000374264 N/A N/A N/A N/A 0.719±0.00 0.658±0.31 0.243±0.00 0.660±0.00 1.344±0.00 1.145±0.00 N/A 1.021±0.00 3.836±2.11 1.303±0.00
ENST00000374270 0.626±0.00 3.483±0.00 1.419±0.00 0.976±0.28 1.067±0.43 2.867±0.00 1.377±0.00 6.475±0.00 0.263±0.00 N/A N/A 2.183±1.10 2.557±0.68 1.912±0.76
ENST00000415074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.626±0.00 N/A N/A N/A
ENST00000475283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A 1.715±0.00
ENST00000482851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.467±0.00 N/A N/A N/A
ENST00000532348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.602±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XW CIL_0000XW_0001 CGP 9:111896766-112175408
CIL_0005X7 CIL_0005X7_0001 CGP 9:112040785-112333667

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058839 SUSD1 (1 of 3) sushi domain containing 1 protein_coding Danio_rerio
ENSDARG00000094311 SUSD1 (2 of 3) sushi domain containing 1 protein_coding Danio_rerio
ENSMUSG00000038578 Susd1 sushi domain containing 1 protein_coding Mus_musculus

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