C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000XW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000148154-ENSG00000106868 CGP 9606 9:111896766-112175408
GeneTranscriptPositionBiotype
ENSG00000106868 (SUSD1)
sushi domain containing 1 		ENST00000355396 (SUSD1-002) 112040785-112175185 protein_coding
ENST00000374263 (SUSD1-201) 112040785-112175297 protein_coding
ENST00000374264 (SUSD1-006) 112041079-112175267 protein_coding
ENST00000374270 (SUSD1-003) 112040785-112175408 protein_coding
ENST00000415074 (SUSD1-005) 112098582-112142466 protein_coding
ENST00000475283 (SUSD1-001) 112041083-112058471 nonsense_mediated_decay
ENST00000482851 (SUSD1-004) 112124296-112146176 processed_transcript
ENST00000528773 (SUSD1-008) 112102176-112112083 retained_intron
ENST00000529933 (SUSD1-007) 112080074-112104958 processed_transcript
ENST00000532348 (SUSD1-009) 112112792-112142588 retained_intron
ENSG00000148154 (UGCG)
UDP-glucose ceramide glucosyltransferase 		ENST00000374279 (UGCG-001) 111896766-111935369 protein_coding
ENST00000474306 (UGCG-004) 111929249-111931308 processed_transcript
ENST00000489355 (UGCG-002) 111897177-111914993 processed_transcript
ENST00000490110 (UGCG-003) 111897201-111926426 processed_transcript
ENST00000495085 (UGCG-005) 111897201-111929666 processed_transcript
ENSG00000200261 (Y_RNA)
Y RNA 		ENST00000363391 (Y_RNA.1-328) 112169286-112169397 misc_RNA
ENSG00000225513 (RP11-165N19.2)
 ENST00000451825 (RP11-165N19.2-001) 112173522-112173971 processed_pseudogene
ENSG00000259953 (RP11-4O1.2)
 ENST00000563249 (RP11-4O1.2-003) 112035861-112037115 sense_overlapping
ENST00000563434 (RP11-4O1.2-002) 112032555-112037730 sense_overlapping
ENST00000568421 (RP11-4O1.2-001) 112033394-112036310 sense_overlapping
ENSG00000266315 (MIR4668)
microRNA 4668 		ENST00000582284 (MIR4668-201) 111932100-111932169 miRNA
CIL_0000XW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028381-ENSMUSG00000038578 CGP 10090 4:59189257-59438633
GeneTranscriptPositionBiotype
ENSMUSG00000028381 (Ugcg)
UDP-glucose ceramide glucosyltransferase 		ENSMUST00000030074 (Ugcg-001) 59189257-59222833 protein_coding
ENSMUST00000128227 (Ugcg-003) 59211720-59213909 processed_transcript
ENSMUST00000133996 (Ugcg-002) 59189558-59212203 processed_transcript
ENSMUST00000155153 (Ugcg-004) 59212656-59214293 processed_transcript
ENSMUSG00000038578 (Susd1)
sushi domain containing 1 		ENSMUST00000040166 (Susd1-201) 59314683-59438633 protein_coding
ENSMUST00000107544 (Susd1-001) 59314754-59438633 protein_coding
ENSMUST00000136077 (Susd1-002) 59331957-59362982 retained_intron
ENSMUST00000136562 (Susd1-003) 59329210-59333022 retained_intron
ENSMUST00000136942 (Susd1-004) 59314683-59315966 retained_intron
ENSMUSG00000083979 (Gm12527)
predicted gene 12527 		ENSMUST00000117967 (Gm12527-001) 59368303-59368866 processed_pseudogene
ENSMUSG00000086952 (Gm12596)
predicted gene 12596 		ENSMUST00000124589 (Gm12596-001) 59260051-59263269 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XW_0001ENSG00000106868ENST00000355396ENST00000374263ENST00000374264ENST00000374270ENST00000415074ENST00000475283ENST00000482851ENST00000528773ENST00000529933ENST00000532348ENSG00000148154ENST00000374279ENST00000474306ENST00000489355ENST00000490110ENST00000495085ENSG00000200261ENST00000363391ENSG00000225513ENST00000451825ENSG00000259953ENST00000563249ENST00000563434ENST00000568421ENSG00000266315ENST00000582284CIL_0000XW_0002ENSMUSG00000028381ENSMUST00000030074ENSMUST00000128227ENSMUST00000133996ENSMUST00000155153ENSMUSG00000038578ENSMUST00000040166ENSMUST00000107544ENSMUST00000136077ENSMUST00000136562ENSMUST00000136942ENSMUSG00000083979ENSMUST00000117967ENSMUSG00000086952ENSMUST00000124589
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XW_0001ENSG00000106868ENST00000355396ENST00000374263ENST00000374264ENST00000374270ENST00000415074ENST00000475283ENST00000482851ENST00000532348ENSG00000148154ENST00000374279ENST00000495085ENSG00000200261ENST00000363391ENSG00000225513ENST00000451825ENSG00000259953ENST00000563249ENST00000563434ENST00000568421ENSG00000266315ENST00000582284CIL_0000XW_0002ENSMUSG00000028381ENSMUST00000030074ENSMUST00000133996ENSMUSG00000038578ENSMUST00000040166ENSMUST00000107544ENSMUST00000136562ENSMUST00000136942ENSMUSG00000083979ENSMUST00000117967ENSMUSG00000086952ENSMUST00000124589
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106868 ENST00000355396 N/A N/A N/A 2.424±1.21 N/A 0.504±0.00 N/A N/A N/A N/A 0.242±0.00 1.223±0.00 2.002±0.01 N/A
ENST00000374263 N/A N/A N/A 1.472±0.00 1.299±0.00 N/A 1.049±0.00 0.443±0.00 0.453±0.05 1.299±0.52 N/A 6.565±0.00 1.682±0.00 N/A
ENST00000374264 N/A N/A N/A N/A 0.719±0.00 0.658±0.31 0.243±0.00 0.660±0.00 1.344±0.00 1.145±0.00 N/A 1.021±0.00 3.836±2.11 1.303±0.00
ENST00000374270 0.626±0.00 3.483±0.00 1.419±0.00 0.976±0.28 1.067±0.43 2.867±0.00 1.377±0.00 6.475±0.00 0.263±0.00 N/A N/A 2.183±1.10 2.557±0.68 1.912±0.76
ENST00000415074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.626±0.00 N/A N/A N/A
ENST00000475283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A 1.715±0.00
ENST00000482851 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.467±0.00 N/A N/A N/A
ENST00000528773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.602±0.00 N/A N/A N/A
ENSG00000148154 ENST00000374279 14.297±0.00 19.814±0.00 0.612±0.00 6.059±2.23 4.850±0.42 6.425±3.73 2.614±1.58 7.464±4.35 2.905±0.21 21.530±14.03 2.076±1.54 6.530±2.08 6.654±1.45 3.306±0.76
ENST00000474306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495085 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.220±0.00 2.062±0.00
ENSG00000200261 ENST00000363391 N/A 1.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.272±0.00
ENSG00000225513 ENST00000451825 N/A 0.145±0.00 N/A 0.109±0.00 0.156±0.00 0.284±0.00 0.088±0.00 N/A 0.152±0.00 0.048±0.00 0.084±0.00 0.191±0.09 N/A 0.132±0.00
ENSG00000259953 ENST00000563249 N/A N/A 0.580±0.00 N/A 0.625±0.00 0.674±0.00 N/A N/A N/A 0.760±0.00 N/A N/A N/A N/A
ENST00000563434 0.144±0.00 0.650±0.00 0.037±0.00 N/A 0.226±0.18 N/A N/A N/A 0.097±0.02 0.208±0.00 0.100±0.00 0.388±0.23 0.117±0.00 N/A
ENST00000568421 0.103±0.00 N/A 0.174±0.00 0.483±0.00 0.297±0.00 N/A N/A 0.933±0.00 0.172±0.00 0.701±0.00 N/A N/A 0.152±0.00 0.175±0.00
ENSG00000266315 ENST00000582284 0.800±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.953±0.00 N/A N/A N/A 0.360±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028381 ENSMUST00000030074 11.333±2.34 5.989±2.65 18.927±2.82 11.813±8.06 15.585±6.59 29.657±7.13 6.208±0.27 5.132±1.13 13.432±7.03 17.407±5.38 1.556±0.73 17.445±6.33 11.448±8.27 4.532±2.29
ENSMUST00000128227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133996 17.774±2.83 78.457±27.75 N/A N/A 53.955±8.93 34.864±10.18 N/A 5.109±0.87 8.212±1.19 34.017±11.67 N/A 30.895±6.08 N/A N/A
ENSMUST00000155153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038578 ENSMUST00000040166 2.344±1.86 0.813±0.33 2.208±0.82 0.460±0.07 2.276±1.03 0.179±0.03 0.120±0.00 1.696±0.36 4.272±3.30 0.888±0.21 0.050±0.04 7.488±2.30 6.426±3.06 0.866±0.17
ENSMUST00000107544 N/A 0.784±0.16 N/A N/A 0.457±0.00 0.357±0.12 0.101±0.01 N/A N/A 0.347±0.00 0.018±0.00 2.309±0.00 4.220±0.00 0.359±0.00
ENSMUST00000136077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136562 N/A N/A N/A N/A N/A N/A 0.392±0.00 N/A N/A N/A 0.081±0.02 N/A N/A N/A
ENSMUST00000136942 N/A N/A N/A 0.821±0.00 3.037±0.73 0.950±0.46 N/A N/A 0.899±0.00 N/A 0.101±0.08 N/A N/A N/A
ENSMUSG00000083979 ENSMUST00000117967 N/A N/A 0.090±0.04 0.036±0.00 0.087±0.00 0.149±0.01 N/A N/A 0.048±0.03 0.093±0.00 N/A 0.330±0.27 0.148±0.04 0.080±0.00
ENSMUSG00000086952 ENSMUST00000124589 0.165±0.09 N/A 0.042±0.03 0.034±0.02 0.651±0.54 0.809±0.21 N/A 0.060±0.00 0.112±0.06 0.131±0.06 N/A 0.207±0.17 0.097±0.00 N/A

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