C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 56
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038637 Lrrc56 10090 + 7:141194157-141210055 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047093 Lrrc56-001 141195078-141210047 protein_coding
  ENSMUST00000070458 Lrrc56-003 141194176-141210049 protein_coding
  ENSMUST00000084446 Lrrc56-002 141194157-141210055 protein_coding
  ENSMUST00000144008 Lrrc56-005 141196934-141199835 processed_transcript
  ENSMUST00000144199 Lrrc56-004 141194179-141200938 retained_intron
  ENSMUST00000150141 Lrrc56-006 141195143-141198283 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047093ENSMUST00000070458ENSMUST00000084446ENSMUST00000144199
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047093 0.913±0.31 1.620±0.55 0.987±0.21 5.236±3.36 1.686±0.38 2.242±0.34 0.477±0.14 2.006±0.82 4.678±3.42 4.725±0.67 0.297±0.20 4.057±1.40 0.264±0.00 31.775±3.58
ENSMUST00000070458 1.035±0.33 1.137±0.25 1.219±0.04 N/A 1.856±0.45 2.899±1.00 0.590±0.16 1.461±0.33 1.296±0.51 1.111±0.00 0.362±0.15 1.457±0.51 1.472±0.54 21.528±5.32
ENSMUST00000084446 N/A N/A N/A 0.557±0.00 N/A N/A N/A N/A 0.522±0.00 N/A 0.370±0.00 1.535±0.00 N/A N/A
ENSMUST00000144199 0.473±0.07 0.672±0.00 0.510±0.09 0.375±0.25 0.663±0.00 N/A N/A N/A 1.439±0.59 1.189±0.15 0.076±0.00 1.149±0.58 0.286±0.14 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040A CIL_00040A_0003 CGP 7:141189105-141210055
CIL_0003OU CIL_0003OU_0002 CGP 7:141194157-141214082

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089057 LRRC56 (1 of 2) leucine rich repeat containing 56 protein_coding Danio_rerio
ENSDARG00000096081 LRRC56 (2 of 2) leucine rich repeat containing 56 protein_coding Danio_rerio
ENSG00000161328 LRRC56 leucine rich repeat containing 56 protein_coding Homo_sapiens

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