C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trichorhinophalangeal syndrome I (human)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038679 Trps1 10090 - 15:50654752-50890463 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077935 Trps1-201 50660451-50890041 protein_coding
  ENSMUST00000165201 Trps1-001 50654752-50889691 protein_coding
  ENSMUST00000183421 Trps1-006 50819499-50827521 protein_coding
  ENSMUST00000183757 Trps1-003 50658429-50889049 protein_coding
  ENSMUST00000183997 Trps1-004 50660434-50889046 protein_coding
  ENSMUST00000184458 Trps1-002 50658411-50889713 protein_coding
  ENSMUST00000184885 Trps1-005 50660435-50882806 protein_coding
  ENSMUST00000185183 Trps1-007 50846176-50890463 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077935ENSMUST00000165201ENSMUST00000183421ENSMUST00000183757ENSMUST00000183997ENSMUST00000184458ENSMUST00000184885ENSMUST00000185183
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077935 1.737±0.63 0.400±0.19 N/A 0.715±0.00 3.391±0.51 0.432±0.16 0.211±0.03 1.885±0.03 N/A 0.578±0.08 N/A 1.032±0.29 N/A 0.111±0.02
ENSMUST00000165201 2.921±0.83 0.515±0.22 2.012±0.53 0.904±0.31 3.413±1.14 0.645±0.20 0.235±0.10 0.983±0.40 0.103±0.07 1.291±0.02 0.249±0.25 1.424±0.91 0.268±0.22 0.065±0.00
ENSMUST00000183421 N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A N/A
ENSMUST00000183757 2.114±0.00 N/A N/A N/A 1.430±0.00 0.383±0.06 0.121±0.00 N/A N/A 0.411±0.06 N/A 1.772±0.71 N/A 0.127±0.00
ENSMUST00000183997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.950±0.00 N/A 0.090±0.00
ENSMUST00000184458 N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.01 N/A N/A 1.527±0.35 N/A 0.080±0.01
ENSMUST00000184885 N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.01 N/A N/A 1.359±0.43 N/A N/A
ENSMUST00000185183 N/A N/A N/A N/A N/A N/A N/A N/A 0.131±0.02 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RP CIL_0005RP_0002 CGP 15:47580637-50890463
CIL_00097I CIL_00097I_0002 VISTA 15:50364833-50966650
CIL_0005RQ CIL_0005RQ_0002 CGP 15:50654752-51865481

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0002062 IGI chondrocyte differentiation
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007178 IGI transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0008270 IEA zinc ion binding
GO:0031063 IEA regulation of histone deacetylation
GO:0032330 IEA regulation of chondrocyte differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IPI negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:1902043 IGI positive regulation of extrinsic apoptotic signaling pathway via death domain receptors

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068028 trps1 trichorhinophalangeal syndrome I protein_coding Danio_rerio
ENSG00000104447 TRPS1 trichorhinophalangeal syndrome I protein_coding Homo_sapiens

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