C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trichorhinophalangeal syndrome I (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165201 Trps1-001 ENSMUSG00000038679 10090 - 15:50654752-50889691 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165201
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165201 2.921±0.83 0.515±0.22 2.012±0.53 0.904±0.31 3.413±1.14 0.645±0.20 0.235±0.10 0.983±0.40 0.103±0.07 1.291±0.02 0.249±0.25 1.424±0.91 0.268±0.22 0.065±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RP CIL_0005RP_0002 CGP 15:47580637-50890463
CIL_00097I CIL_00097I_0002 VISTA 15:50364833-50966650
CIL_0005RQ CIL_0005RQ_0002 CGP 15:50654752-51865481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0002062 IGI chondrocyte differentiation
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0007178 IGI transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0008270 IEA zinc ion binding
GO:0031063 IEA regulation of histone deacetylation
GO:0032330 IEA regulation of chondrocyte differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IPI negative regulation of transcription, DNA-templated
GO:1902043 IGI positive regulation of extrinsic apoptotic signaling pathway via death domain receptors

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000056809 trps1-201 protein_coding Danio_rerio 0.00000002 68
ENST00000220888 TRPS1-002 protein_coding Homo_sapiens 0 6962
ENST00000395713 TRPS1-005 protein_coding Homo_sapiens 0 372
ENST00000395715 TRPS1-001 protein_coding Homo_sapiens 0 8191
ENST00000422939 TRPS1-004 protein_coding Homo_sapiens 0 215
ENST00000517323 TRPS1-008 protein_coding Homo_sapiens 0 1729
ENST00000518018 TRPS1-011 protein_coding Homo_sapiens 0 1175
ENST00000519076 TRPS1-009 protein_coding Homo_sapiens 0 2981
ENST00000519674 TRPS1-007 protein_coding Homo_sapiens 0 3563
ENST00000519815 TRPS1-010 protein_coding Homo_sapiens 0 359
ENST00000520276 TRPS1-006 protein_coding Homo_sapiens 0 5448

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