C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CCR4-NOT transcription complex, subunit 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038784 Cnot4 10090 - 6:35022066-35133737 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000044163 Cnot4-201 35042709-35133737 protein_coding
  ENSMUST00000114989 Cnot4-202 35022066-35133737 protein_coding
  ENSMUST00000114993 Cnot4-203 35022066-35133737 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000044163ENSMUST00000114989ENSMUST00000114993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000044163 0.835±0.27 N/A 0.735±0.08 1.154±0.65 0.946±0.07 0.712±0.00 0.509±0.05 0.806±0.01 0.517±0.07 1.119±0.06 0.594±0.22 0.992±0.36 0.561±0.38 N/A
ENSMUST00000114989 0.662±0.14 0.858±0.08 N/A 1.286±0.00 3.006±1.81 N/A 0.731±0.10 1.099±0.16 1.379±0.09 N/A 0.983±0.29 1.716±0.00 0.865±0.34 N/A
ENSMUST00000114993 3.828±0.91 4.010±0.40 2.961±0.00 4.102±1.87 3.631±1.77 4.104±0.56 2.716±0.31 4.434±1.38 3.584±1.07 2.672±0.28 2.230±0.60 4.926±1.63 4.228±1.02 26.901±9.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002H2 CIL_0002H2_0002 CGP 6:35022066-35247590

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0030014 ISS CCR4-NOT complex
GO:0044822 IEA poly(A) RNA binding
GO:0051865 ISS protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007045 CNOT4 (1 of 2) CCR4-NOT transcription complex, subunit 4 protein_coding Danio_rerio
ENSDARG00000007639 CNOT4 (2 of 2) CCR4-NOT transcription complex, subunit 4 protein_coding Danio_rerio
ENSG00000080802 CNOT4 CCR4-NOT transcription complex, subunit 4 protein_coding Homo_sapiens

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