C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114993 Cnot4-203 ENSMUSG00000038784 10090 - 6:35022066-35133737 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114993 3.828±0.91 4.010±0.40 2.961±0.00 4.102±1.87 3.631±1.77 4.104±0.56 2.716±0.31 4.434±1.38 3.584±1.07 2.672±0.28 2.230±0.60 4.926±1.63 4.228±1.02 26.901±9.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002H2 CIL_0002H2_0002 CGP 6:35022066-35247590

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0030014 ISS CCR4-NOT complex
GO:0044822 IEA poly(A) RNA binding
GO:0051865 ISS protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000022646 CNOT4 (2 of 2)-001 protein_coding Danio_rerio 4e-32 145
ENST00000315544 CNOT4-201 protein_coding Homo_sapiens 0 2918
ENST00000356162 CNOT4-202 protein_coding Homo_sapiens 0 1827
ENST00000361528 CNOT4-009 protein_coding Homo_sapiens 0 2907
ENST00000414802 CNOT4-004 protein_coding Homo_sapiens 0 1873
ENST00000423368 CNOT4-001 protein_coding Homo_sapiens 0 2844
ENST00000428680 CNOT4-002 protein_coding Homo_sapiens 0 2880
ENST00000451834 CNOT4-003 protein_coding Homo_sapiens 0 4761
ENST00000465721 CNOT4-006 processed_transcript Homo_sapiens 0 457
ENST00000473470 CNOT4-008 processed_transcript Homo_sapiens 0 651
ENST00000491203 CNOT4-007 processed_transcript Homo_sapiens 0 590
ENST00000498534 CNOT4-005 processed_transcript Homo_sapiens 0 510
ENST00000541284 CNOT4-203 protein_coding Homo_sapiens 0 4793

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