C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002H2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000080802-ENSG00000155561 CGP 9606 7:135361795-135648757
GeneTranscriptPositionBiotype
ENSG00000155561 (NUP205)
nucleoporin 205kDa 		ENST00000285968 (NUP205-001) 135557919-135648757 protein_coding
ENST00000461255 (NUP205-008) 135635315-135648757 retained_intron
ENST00000462316 (NUP205-011) 135597239-135601450 retained_intron
ENST00000463247 (NUP205-012) 135606871-135616701 nonsense_mediated_decay
ENST00000472132 (NUP205-015) 135606149-135615997 protein_coding
ENST00000477620 (NUP205-007) 135619814-135648724 nonsense_mediated_decay
ENST00000489493 (NUP205-010) 135557932-135573777 processed_transcript
ENST00000490439 (NUP205-013) 135644899-135648725 nonsense_mediated_decay
ENST00000491089 (NUP205-014) 135646025-135648749 retained_intron
ENST00000607647 (NUP205-016) 135597740-135648757 retained_intron
ENSG00000227073 (SDHDP2)
succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 2 		ENST00000436937 (SDHDP2-001) 135444461-135444925 processed_pseudogene
CIL_0002H2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038784-ENSMUSG00000038759 CGP 10090 6:35022066-35247590
GeneTranscriptPositionBiotype
ENSMUSG00000038759 (Nup205)
nucleoporin 205 		ENSMUST00000043815 (Nup205-201) 35177430-35247449 protein_coding
ENSMUST00000170234 (Nup205-202) 35177629-35247590 protein_coding
ENSMUSG00000038784 (Cnot4)
CCR4-NOT transcription complex, subunit 4 		ENSMUST00000044163 (Cnot4-201) 35042709-35133737 protein_coding
ENSMUST00000114989 (Cnot4-202) 35022066-35133737 protein_coding
ENSMUST00000114993 (Cnot4-203) 35022066-35133737 protein_coding
ENSMUSG00000087808 (Gm23435)
predicted gene, 23435 		ENSMUST00000157183 (Gm23435-201) 35243595-35243750 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002H2_0001ENSG00000155561ENST00000285968ENST00000461255ENST00000462316ENST00000463247ENST00000472132ENST00000477620ENST00000489493ENST00000490439ENST00000491089ENST00000607647ENSG00000227073ENST00000436937CIL_0002H2_0002ENSMUSG00000038759ENSMUST00000043815ENSMUST00000170234ENSMUSG00000038784ENSMUST00000044163ENSMUST00000114989ENSMUST00000114993ENSMUSG00000087808ENSMUST00000157183
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002H2_0001ENSG00000155561ENST00000285968ENST00000461255ENST00000472132ENST00000477620ENST00000607647ENSG00000227073ENST00000436937CIL_0002H2_0002ENSMUSG00000038759ENSMUST00000043815ENSMUST00000170234ENSMUSG00000038784ENSMUST00000044163ENSMUST00000114989ENSMUST00000114993ENSMUSG00000087808ENSMUST00000157183
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155561 ENST00000285968 3.532±0.00 2.925±0.00 0.572±0.00 1.108±0.22 1.583±0.00 2.664±0.07 0.903±0.05 2.321±0.67 1.232±0.67 2.133±0.65 1.395±0.83 5.278±1.83 3.539±0.08 3.100±0.74
ENST00000461255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.841±0.00 3.582±0.00 3.854±0.06 N/A
ENST00000462316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472132 N/A N/A 4.832±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477620 2.644±0.00 6.613±0.00 N/A 2.442±0.00 3.186±0.00 2.708±0.00 1.323±0.00 5.162±0.00 1.955±0.00 3.513±0.00 1.732±0.00 3.882±0.00 N/A 6.587±0.00
ENST00000489493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607647 N/A N/A 0.406±0.00 N/A 1.157±0.00 1.241±0.00 N/A N/A N/A 1.340±0.00 N/A N/A N/A N/A
ENSG00000227073 ENST00000436937 N/A N/A N/A N/A 0.579±0.00 N/A N/A N/A N/A 0.851±0.00 0.035±0.00 0.274±0.16 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038759 ENSMUST00000043815 8.197±3.15 5.781±0.74 3.628±0.27 6.838±3.49 5.925±1.28 4.052±0.52 2.491±0.43 3.543±0.53 4.865±3.44 5.232±0.93 1.314±0.53 11.544±2.50 10.412±6.31 32.179±14.88
ENSMUST00000170234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.213±0.00
ENSMUSG00000038784 ENSMUST00000044163 0.835±0.27 N/A 0.735±0.08 1.154±0.65 0.946±0.07 0.712±0.00 0.509±0.05 0.806±0.01 0.517±0.07 1.119±0.06 0.594±0.22 0.992±0.36 0.561±0.38 N/A
ENSMUST00000114989 0.662±0.14 0.858±0.08 N/A 1.286±0.00 3.006±1.81 N/A 0.731±0.10 1.099±0.16 1.379±0.09 N/A 0.983±0.29 1.716±0.00 0.865±0.34 N/A
ENSMUST00000114993 3.828±0.91 4.010±0.40 2.961±0.00 4.102±1.87 3.631±1.77 4.104±0.56 2.716±0.31 4.434±1.38 3.584±1.07 2.672±0.28 2.230±0.60 4.926±1.63 4.228±1.02 26.901±9.68
ENSMUSG00000087808 ENSMUST00000157183 N/A N/A N/A 6.758±0.00 N/A N/A N/A N/A 3.859±0.00 N/A N/A 1.988±0.00 N/A N/A

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