C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: YTH domain family 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038848 Ythdf1 10090 - 2:180904377-180920949 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037299 Ythdf1-001 180904377-180920949 protein_coding
  ENSMUST00000108876 Ythdf1-002 180905370-180920949 protein_coding
  ENSMUST00000124666 Ythdf1-003 180911768-180920387 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037299ENSMUST00000108876ENSMUST00000124666
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037299 8.749±6.85 11.851±0.86 13.172±1.14 12.657±6.57 9.562±3.63 10.867±2.61 6.157±1.99 5.776±1.22 8.661±3.73 13.281±0.57 6.865±2.70 11.690±4.55 10.759±5.23 3.720±1.24
ENSMUST00000108876 N/A N/A N/A N/A N/A 4.014±0.00 N/A N/A N/A N/A N/A N/A 9.100±1.24 0.771±0.00
ENSMUST00000124666 14.313±0.00 20.289±2.91 N/A N/A 17.058±7.49 12.932±0.00 6.504±0.57 9.711±1.25 10.809±1.99 13.628±1.01 N/A 16.452±1.88 N/A 5.491±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001O2 CIL_0001O2_0002 CGP 2:180774381-180920949
CIL_0001NY CIL_0001NY_0002 CGP 2:180904377-180934010

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding
GO:1990247 ISS N6-methyladenosine-containing RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016447 ythdf1 YTH domain family, member 1 protein_coding Danio_rerio
ENSG00000149658 YTHDF1 YTH domain family, member 1 protein_coding Homo_sapiens

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