C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YTH domain family 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037299 Ythdf1-001 ENSMUSG00000038848 10090 - 2:180904377-180920949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037299
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037299 8.749±6.85 11.851±0.86 13.172±1.14 12.657±6.57 9.562±3.63 10.867±2.61 6.157±1.99 5.776±1.22 8.661±3.73 13.281±0.57 6.865±2.70 11.690±4.55 10.759±5.23 3.720±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001O2 CIL_0001O2_0002 CGP 2:180774381-180920949
CIL_0001NY CIL_0001NY_0002 CGP 2:180904377-180934010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding
GO:1990247 ISS N6-methyladenosine-containing RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000122294 ythdf3-001 protein_coding Danio_rerio 0 409
ENST00000370334 YTHDF1-002 protein_coding Homo_sapiens 0 357
ENST00000370339 YTHDF1-001 protein_coding Homo_sapiens 0 2337
ENST00000515217 YTHDF1P1-001 processed_pseudogene Homo_sapiens 0 1221

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