C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001O2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125533-ENSG00000149658 CGP 9606 20:63005927-63216234
GeneTranscriptPositionBiotype
ENSG00000125514 (LINC00029)
long intergenic non-protein coding RNA 29 		ENST00000370341 (LINC00029-001) 63034217-63037028 lincRNA
ENST00000414668 (LINC00029-003) 63034217-63036396 lincRNA
ENST00000456634 (LINC00029-002) 63034383-63036353 lincRNA
ENSG00000125533 (BHLHE23)
basic helix-loop-helix family, member e23 		ENST00000370346 (BHLHE23-201) 63005979-63007035 protein_coding
ENST00000612929 (BHLHE23-001) 63005927-63007035 protein_coding
ENSG00000225978 (HAR1A)
highly accelerated region 1A (non-protein coding) 		ENST00000433161 (HAR1A-001) 63102205-63104386 lincRNA
ENSG00000231133 (HAR1B)
highly accelerated region 1B (non-protein coding) 		ENST00000447910 (HAR1B-001) 63095493-63102319 lincRNA
ENST00000608031 (HAR1B-002) 63095493-63102319 lincRNA
ENSG00000231977 (RP5-963E22.4)
 ENST00000423020 (RP5-963E22.4-001) 63166797-63180903 lincRNA
ENSG00000237119 (LINC01056)
long intergenic non-protein coding RNA 1056 		ENST00000455711 (LINC01056-001) 63038011-63053863 lincRNA
ENSG00000260416 (RP5-963E22.5)
 ENST00000567259 (RP5-963E22.5-001) 63127495-63129459 lincRNA
ENSG00000272259 (RP11-305P22.9)
 ENST00000606208 (RP11-305P22.9-002) 63009383-63084133 lincRNA
ENST00000607802 (RP11-305P22.9-001) 63009383-63085071 lincRNA
ENSG00000274915 (HAR1A)
Highly accelerated region 1A/1B 		ENST00000459583 (HAR1A.1-201) 63102142-63102259 misc_RNA
CIL_0001O2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045493-ENSMUSG00000038848 CGP 10090 2:180774381-180920949
GeneTranscriptPositionBiotype
ENSMUSG00000038848 (Ythdf1)
YTH domain family 1 		ENSMUST00000037299 (Ythdf1-001) 180904377-180920949 protein_coding
ENSMUST00000108876 (Ythdf1-002) 180905370-180920949 protein_coding
ENSMUST00000124666 (Ythdf1-003) 180911768-180920387 protein_coding
ENSMUSG00000045493 (Bhlhe23)
basic helix-loop-helix family, member e23 		ENSMUST00000108878 (Bhlhe23-001) 180774381-180776900 protein_coding
ENSMUSG00000074507 (Gm14340)
predicted gene 14340 		ENSMUST00000148700 (Gm14340-001) 180818343-180824630 lincRNA
ENSMUSG00000085428 (Gm14344)
predicted gene 14344 		ENSMUST00000139338 (Gm14344-001) 180836481-180848914 lincRNA
ENSMUSG00000085728 (Gm14339)
predicted gene 14339 		ENSMUST00000146224 (Gm14339-001) 180847652-180849046 lincRNA
ENSMUSG00000086166 (Gm14342)
predicted gene 14342 		ENSMUST00000137629 (Gm14342-001) 180829490-180889660 lincRNA
ENSMUSG00000087550 (Gm14343)
predicted gene 14343 		ENSMUST00000154524 (Gm14343-001) 180766214-180775403 processed_transcript
ENSMUSG00000088334 (Gm22842)
predicted gene, 22842 		ENSMUST00000157709 (Gm22842-201) 180837838-180837955 misc_RNA
ENSMUSG00000098051 (Gm27032)
predicted gene, 27032 		ENSMUST00000183124 (Gm27032-001) 180894105-180895220 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001O2_0001ENSG00000125514ENST00000370341ENST00000414668ENST00000456634ENSG00000125533ENST00000370346ENST00000612929ENSG00000225978ENST00000433161ENSG00000231133ENST00000447910ENST00000608031ENSG00000231977ENST00000423020ENSG00000237119ENST00000455711ENSG00000260416ENST00000567259ENSG00000272259ENST00000606208ENST00000607802ENSG00000274915ENST00000459583CIL_0001O2_0002ENSMUSG00000038848ENSMUST00000037299ENSMUST00000108876ENSMUST00000124666ENSMUSG00000045493ENSMUST00000108878ENSMUSG00000074507ENSMUST00000148700ENSMUSG00000085428ENSMUST00000139338ENSMUSG00000085728ENSMUST00000146224ENSMUSG00000086166ENSMUST00000137629ENSMUSG00000087550ENSMUST00000154524ENSMUSG00000088334ENSMUST00000157709ENSMUSG00000098051ENSMUST00000183124
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001O2_0001ENSG00000125514ENST00000370341ENST00000414668ENST00000456634ENSG00000125533ENST00000370346ENSG00000225978ENST00000433161ENSG00000231133ENST00000447910ENST00000608031ENSG00000231977ENST00000423020ENSG00000237119ENST00000455711ENSG00000260416ENST00000567259ENSG00000272259ENST00000606208ENST00000607802ENSG00000274915ENST00000459583CIL_0001O2_0002ENSMUSG00000038848ENSMUST00000037299ENSMUST00000108876ENSMUST00000124666ENSMUSG00000045493ENSMUST00000108878ENSMUSG00000074507ENSMUST00000148700ENSMUSG00000085428ENSMUST00000139338ENSMUSG00000085728ENSMUST00000146224ENSMUSG00000086166ENSMUST00000137629ENSMUSG00000087550ENSMUST00000154524ENSMUSG00000088334ENSMUST00000157709ENSMUSG00000098051ENSMUST00000183124
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125514 ENST00000370341 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.194±0.13 N/A 3.923±2.57
ENST00000414668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A 0.739±0.00
ENST00000456634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.162±0.00 N/A N/A
ENSG00000125533 ENST00000370346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.449±0.00
ENST00000612929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225978 ENST00000433161 0.322±0.00 0.406±0.00 N/A 1.688±1.00 0.178±0.00 0.446±0.00 0.040±0.02 0.053±0.00 0.137±0.00 0.479±0.00 0.233±0.00 0.522±0.11 0.150±0.12 0.871±0.10
ENSG00000231133 ENST00000447910 N/A 0.369±0.00 N/A 0.361±0.22 N/A N/A N/A N/A 0.144±0.00 N/A N/A 0.217±0.13 N/A 3.268±2.04
ENST00000608031 N/A N/A N/A N/A 0.125±0.00 0.079±0.00 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000231977 ENST00000423020 0.048±0.00 0.466±0.00 N/A 0.199±0.07 N/A N/A 0.051±0.00 N/A 0.050±0.00 N/A N/A 0.137±0.00 0.133±0.02 0.996±0.06
ENSG00000237119 ENST00000455711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.00 N/A 0.186±0.03
ENSG00000260416 ENST00000567259 0.008±0.00 0.027±0.00 N/A 0.039±0.00 N/A N/A N/A N/A N/A N/A N/A 0.037±0.01 N/A 0.870±0.41
ENSG00000272259 ENST00000606208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 N/A 0.022±0.00
ENST00000607802 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A 0.057±0.05 N/A 0.059±0.01
ENSG00000274915 ENST00000459583 N/A N/A N/A N/A N/A 1.061±0.00 0.695±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038848 ENSMUST00000037299 8.749±6.85 11.851±0.86 13.172±1.14 12.657±6.57 9.562±3.63 10.867±2.61 6.157±1.99 5.776±1.22 8.661±3.73 13.281±0.57 6.865±2.70 11.690±4.55 10.759±5.23 3.720±1.24
ENSMUST00000108876 N/A N/A N/A N/A N/A 4.014±0.00 N/A N/A N/A N/A N/A N/A 9.100±1.24 0.771±0.00
ENSMUST00000124666 14.313±0.00 20.289±2.91 N/A N/A 17.058±7.49 12.932±0.00 6.504±0.57 9.711±1.25 10.809±1.99 13.628±1.01 N/A 16.452±1.88 N/A 5.491±0.49
ENSMUSG00000045493 ENSMUST00000108878 N/A N/A 0.008±0.00 1.537±1.57 N/A N/A N/A N/A 0.006±0.00 0.014±0.00 N/A N/A 0.009±0.01 0.051±0.05
ENSMUSG00000074507 ENSMUST00000148700 0.074±0.03 0.040±0.01 0.048±0.01 0.173±0.20 0.080±0.03 0.146±0.06 0.099±0.05 0.142±0.05 0.056±0.04 0.128±0.09 0.048±0.02 0.165±0.08 0.133±0.11 6.205±2.46
ENSMUSG00000085428 ENSMUST00000139338 N/A 0.792±0.45 N/A 0.089±0.04 N/A 0.663±0.38 N/A N/A N/A 0.089±0.00 0.116±0.00 0.652±0.00 N/A 0.151±0.04
ENSMUSG00000085728 ENSMUST00000146224 N/A 0.633±0.00 N/A N/A N/A 0.442±0.16 N/A N/A N/A N/A N/A N/A N/A 0.098±0.01
ENSMUSG00000086166 ENSMUST00000137629 N/A N/A N/A 0.426±0.28 N/A 0.029±0.00 N/A N/A N/A 0.017±0.00 N/A 0.044±0.02 0.010±0.01 0.039±0.03
ENSMUSG00000087550 ENSMUST00000154524 0.101±0.03 0.218±0.13 0.013±0.00 N/A 0.070±0.00 0.246±0.00 0.041±0.00 0.057±0.02 0.057±0.00 N/A N/A N/A 0.022±0.02 0.215±0.12
ENSMUSG00000088334 ENSMUST00000157709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.793±0.00 N/A N/A
ENSMUSG00000098051 ENSMUST00000183124 N/A N/A 0.010±0.00 16.615±8.71 0.035±0.00 N/A 0.026±0.00 N/A 0.033±0.03 N/A N/A 0.083±0.00 0.729±0.49 1.406±0.87

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