C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription factor-like 5 (basic helix-loop-helix)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038932 Tcfl5 10090 - 2:180621956-180642708 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037877 Tcfl5-001 180621956-180642708 protein_coding
  ENSMUST00000131881 Tcfl5-002 180637466-180642347 retained_intron
  ENSMUST00000161425 Tcfl5-003 180635254-180642589 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037877ENSMUST00000131881ENSMUST00000161425
Transcript ID Adrenal Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037877 N/A 0.099±0.02 0.037±0.00 0.151±0.09 0.082±0.00 0.033±0.01 0.184±0.08 0.948±0.47 84.930±26.05
ENSMUST00000131881 0.178±0.04 0.056±0.00 0.044±0.00 N/A N/A N/A 0.257±0.14 N/A 118.074±0.00
ENSMUST00000161425 0.074±0.00 0.060±0.00 0.040±0.00 N/A N/A 0.062±0.03 0.331±0.00 3.511±0.49 456.286±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001O6 CIL_0001O6_0002 CGP 2:180589245-180622189
CIL_0001O1 CIL_0001O1_0002 CGP 2:180597790-180642708
CIL_0001O0 CIL_0001O0_0002 CGP 2:180621956-180709999

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001673 IDA male germ cell nucleus
GO:0003677 IDA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007283 IEA spermatogenesis
GO:0042127 IEA regulation of cell proliferation
GO:0045595 IEA regulation of cell differentiation
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000101190 TCFL5 transcription factor-like 5 (basic helix-loop-helix) protein_coding Homo_sapiens

Loading