C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor-like 5 (basic helix-loop-helix)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037877 Tcfl5-001 ENSMUSG00000038932 10090 - 2:180621956-180642708 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037877
Transcript ID Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037877 0.099±0.02 0.037±0.00 0.151±0.09 0.082±0.00 0.033±0.01 0.184±0.08 0.948±0.47 84.930±26.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001O6 CIL_0001O6_0002 CGP 2:180589245-180622189
CIL_0001O1 CIL_0001O1_0002 CGP 2:180597790-180642708
CIL_0001O0 CIL_0001O0_0002 CGP 2:180621956-180709999

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001673 IDA male germ cell nucleus
GO:0003677 IDA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007283 IEA spermatogenesis
GO:0042127 IEA regulation of cell proliferation
GO:0045595 IEA regulation of cell differentiation
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000217162 TCFL5-201 protein_coding Homo_sapiens 0 1519
ENST00000335351 TCFL5-001 protein_coding Homo_sapiens 0 1814

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