C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: enhancer of mRNA decapping 3 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038957 Edc3 10090 + 9:57708540-57752499 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043990 Edc3-001 57708540-57752499 protein_coding
  ENSMUST00000137245 Edc3-002 57708555-57751403 nonsense_mediated_decay
  ENSMUST00000142807 Edc3-003 57708567-57715980 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043990ENSMUST00000137245
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043990 3.166±0.54 N/A 4.573±0.88 4.826±1.71 3.489±1.06 3.415±0.60 1.291±0.21 1.778±0.30 4.414±2.62 4.683±0.17 2.110±0.29 4.682±1.21 3.816±0.91 1.101±0.00
ENSMUST00000137245 3.454±0.66 4.463±0.25 N/A 6.041±1.23 4.532±0.21 4.623±1.34 1.365±0.33 2.532±0.47 2.373±0.24 7.456±1.14 N/A 7.402±1.83 3.100±0.34 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0002 VISTA 9:57506610-58107834

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0042802 IEA identical protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000051931 edc3 enhancer of mRNA decapping 3 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000179151 EDC3 enhancer of mRNA decapping 3 protein_coding Homo_sapiens

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